Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004439`

染色体: Chr03 坐标: 62527186-62544330 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004439`
名称	SmilChr03G004439
描述	helicase and polymerase-containing protein TEBICHI
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62527186 - 62544330 / `-`

ID 对照

NCBI Gene ID	`LOC131015201`
GeneID	`131015201`
locus_tag	`-`
NCBI Name	`LOC131015201`
原始查询	`LOC131015201`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	helicase and polymerase-containing protein TEBICHI
产物	helicase and polymerase-containing protein TEBICHI
Arabidopsis	`AT4G32700` (AT4G32700) MUS308 and mammalian DNA polymerase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829406] identity=59.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os12g0291000` - identity=59.2; qcov=0.896; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005524 (ATP binding); GO:0006261 (DNA-templated DNA replication); GO:0006302 (double-strand break repair)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF00476 (DNA_pol_A); PF20470 (HTH_61); PF21099 (POLQ_helical); PF25453 (DUF7898)
InterPro	-
eggNOG	-
NR	GeneID:131015201

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799459.1`
2	Nucleoplasm	核质	0.20000	`XP_057799459.1`
3	Chromosome	染色体	0.00000	`XP_057799459.1`
4	Centromere	着丝粒	0.00000	`XP_057799459.1`
5	Chromatin	染色质	0.00000	`XP_057799459.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62531324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C5
`Chr3:62531875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:62531879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B69,C13
`Chr3:62532156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:62532157`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr3:62532353`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B137
`Chr3:62532353`	`AT`	`A`	1bp_deletion	CDS_variant	1	B137
`Chr3:62532355`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B137
`Chr3:62532355`	`AT`	`A`	1bp_deletion	CDS_variant	1	B137
`Chr3:62532846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B75,B76,D8
`Chr3:62532856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:62533374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B69,C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799459.1

2136 aa

1068

2136

DEAD

Helicase_C

HTH_61

POLQ_helical

DUF7898

DNA_pol_A

PF00270 DEAD 507-682 aa PF00271 Helicase_C 807-888 aa PF20470 HTH_61 893-984 aa PF21099 POLQ_helical 1008-1192 aa PF25453 DUF7898 1198-1262 aa PF00476 DNA_pol_A 1718-2127 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799459.1`	Pfam	`PF00270`	DEAD	Domain	507	682	5.4e-19	69.2	DEAD/DEAH box helicase
`XP_057799459.1`	Pfam	`PF00271`	Helicase_C	Domain	807	888	1.4e-12	48.5	Helicase conserved C-terminal domain
`XP_057799459.1`	Pfam	`PF20470`	HTH_61	Domain	893	984	1.7e-27	96.3	Helix-turn-helix domain
`XP_057799459.1`	Pfam	`PF21099`	POLQ_helical	Domain	1008	1192	4.7e-52	177.0	DNA_pol_Q helicase like region helical domain
`XP_057799459.1`	Pfam	`PF25453`	DUF7898	Domain	1198	1262	1.1e-06	29.7	Domain of unknown function (DUF7898)
`XP_057799459.1`	Pfam	`PF00476`	DNA_pol_A	Domain	1718	2127	5.5e-109	365.3	DNA polymerase family A

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943476.1
ATCCCTCACTCACTCTCGCTCTCGATAAATACACACACACAGAGGCACTCCCCATTTGAAAAAAATTCAATTCAATCAAACAGACGGAACAGAGAAGAAAGTGTAATCTCAAAATCACCTCAGAGGCACGAAAGAGTGCCATGGACTCCGATTCTACTCGTGCCCGTATCGACCAGTTCTTTTCATCCAAAAAGAAGAGAAAATTTGTGTCACCAGCGTCGAAATCTGATAGACCAGAAAAAGAAGCGAAAACCCAAATT...

CDS

1 records

下载 CDS FASTA

LOC131015201
ATGGACTCCGATTCTACTCGTGCCCGTATCGACCAGTTCTTTTCATCCAAAAAGAAGAGAAAATTTGTGTCACCAGCGTCGAAATCTGATAGACCAGAAAAAGAAGCGAAAACCCAAATTGAATGTTCACCTAATGCCAAAGGGTCTTTGGTGAGCTATTTGGAGACCTCACCTGCTAAGTGTGTTAACTCTGCTTCGGATGAGAAGACGAGGCCGATTCCAGTAAAGAGGAATTTGATTTTGGAGGCGGATCGCTTATT...

Protein

1 records

下载 Protein FASTA

XP_057799459.1
MDSDSTRARIDQFFSSKKKRKFVSPASKSDRPEKEAKTQIECSPNAKGSLVSYLETSPAKCVNSASDEKTRPIPVKRNLILEADRLLSKDDNEGALHWRPQCSEASGAAPTMENESLSVIANNAVEGARKDSSVMGALGRSSNLKQFTNSLLSLYCGGLQSSVNLPSETKEIADKRHCSRPSALQLEEETSGRRHCENPSKTQNESFSSPKGGRLKNAEGPADIGFNHLEKDVAQPSLRKCNNITALSTAECETPASFPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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