Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004386

染色体: Chr03 坐标: 62067214-62071808 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004386
名称SmilChr03G004386
描述receptor kinase-like protein Xa21
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向62067214 - 62071808 / +

ID 对照

NCBI Gene IDLOC131015207
GeneID131015207
locus_tag-
NCBI NameLOC131015207
原始查询LOC131015207

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor kinase-like protein Xa21
产物receptor kinase-like protein Xa21
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=35.4; qcov=1.06; evalue=0; confidence=medium
RiceOs02g0216000 (B1307A11.13)
-
identity=37.8; qcov=1.02; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131015207

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057799470.1
2 Nucleus 细胞核 0.00000 XP_057799470.1
3 Chromosome 染色体 0.00000 XP_057799470.1
4 Centromere 着丝粒 0.00000 XP_057799470.1
5 Chromatin 染色质 0.00000 XP_057799470.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:62067750 AT A 1bp_deletion frameshift_variant 8 A1,B10,B102,B133,B29,B80,C46,C72
Chr3:62067780 TTC T 2bp_deletion frameshift_variant 7 A20,B1,B121,B4,B65,C49,C79
Chr3:62067807 C T EMS_canonical_SNV CDS_variant 2 A19,C61
Chr3:62067827 C T EMS_canonical_SNV CDS_variant 1 C44
Chr3:62067854 C T EMS_canonical_SNV CDS_variant 2 C44,C46
Chr3:62067888 GA G 1bp_deletion frameshift_variant 2 B123,C39
Chr3:62067888 GA G 1bp_deletion CDS_variant 2 B123,C39
Chr3:62067895 TCG T 2bp_deletion frameshift_variant 3 B100,C85,D5
Chr3:62067895 TCG T 2bp_deletion CDS_variant 3 B100,C85,D5
Chr3:62067900 C T EMS_canonical_SNV CDS_variant 5 A15,B129,B22,C17,C80
Chr3:62067909 C T EMS_canonical_SNV CDS_variant 4 A21,A24,C13,C61
Chr3:62067930 C T EMS_canonical_SNV CDS_variant 1 B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799470.1
1189 aa
N
1
594
1189
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 248-269 aa PF00560 LRR_1 272-293 aa PF00560 LRR_1 369-390 aa PF13855 LRR_8 369-427 aa PF13855 LRR_8 440-500 aa PF00560 LRR_1 441-463 aa PF00560 LRR_1 517-539 aa PF00560 LRR_1 566-588 aa PF13855 LRR_8 566-625 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 614-635 aa PF00560 LRR_1 663-684 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 877-1045 aa PF07714 PK_Tyr_Ser-Thr 880-1029 aa
XP_057799471.1
1189 aa
N
1
594
1189
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 248-269 aa PF00560 LRR_1 272-293 aa PF00560 LRR_1 369-390 aa PF13855 LRR_8 369-427 aa PF13855 LRR_8 440-500 aa PF00560 LRR_1 441-463 aa PF00560 LRR_1 517-539 aa PF00560 LRR_1 566-588 aa PF13855 LRR_8 566-625 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 614-635 aa PF00560 LRR_1 663-684 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 877-1045 aa PF07714 PK_Tyr_Ser-Thr 880-1029 aa
XP_057799472.1
1158 aa
N
1
579
1158
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 248-269 aa PF00560 LRR_1 272-293 aa PF00560 LRR_1 369-390 aa PF13855 LRR_8 369-427 aa PF13855 LRR_8 440-500 aa PF00560 LRR_1 441-463 aa PF00560 LRR_1 517-539 aa PF00560 LRR_1 566-588 aa PF13855 LRR_8 566-625 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 614-635 aa PF00560 LRR_1 663-684 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 877-1146 aa PF07714 PK_Tyr_Ser-Thr 880-1149 aa
XP_057799473.1
1158 aa
N
1
579
1158
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 248-269 aa PF00560 LRR_1 272-293 aa PF00560 LRR_1 369-390 aa PF13855 LRR_8 369-427 aa PF13855 LRR_8 440-500 aa PF00560 LRR_1 441-463 aa PF00560 LRR_1 517-539 aa PF00560 LRR_1 566-588 aa PF13855 LRR_8 566-625 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 614-635 aa PF00560 LRR_1 663-684 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 877-1146 aa PF07714 PK_Tyr_Ser-Thr 880-1149 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799470.1 Pfam PF08263 LRRNT_2 Family 33 73 1.4e-09 38.8 Leucine rich repeat N-terminal domain
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 150 172 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 174 196 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 248 269 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 272 293 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 369 390 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF13855 LRR_8 Repeat 369 427 3.8e-52 174.6 Leucine rich repeat
XP_057799470.1 Pfam PF13855 LRR_8 Repeat 440 500 3.8e-52 174.6 Leucine rich repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 441 463 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 517 539 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 566 588 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF13855 LRR_8 Repeat 566 625 3.8e-52 174.6 Leucine rich repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 591 612 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 614 635 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 663 684 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00560 LRR_1 Repeat 734 755 1.2e-64 200.8 Leucine Rich Repeat
XP_057799470.1 Pfam PF00069 Pkinase Domain 877 1045 9.2e-35 121.0 Protein kinase domain
XP_057799470.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1029 8.3e-35 121.0 Protein tyrosine and serine/threonine kinase
XP_057799471.1 Pfam PF08263 LRRNT_2 Family 33 73 1.4e-09 38.8 Leucine rich repeat N-terminal domain
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 150 172 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 174 196 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 248 269 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 272 293 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 369 390 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF13855 LRR_8 Repeat 369 427 3.8e-52 174.6 Leucine rich repeat
XP_057799471.1 Pfam PF13855 LRR_8 Repeat 440 500 3.8e-52 174.6 Leucine rich repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 441 463 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 517 539 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 566 588 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF13855 LRR_8 Repeat 566 625 3.8e-52 174.6 Leucine rich repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 591 612 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 614 635 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 663 684 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00560 LRR_1 Repeat 734 755 1.2e-64 200.8 Leucine Rich Repeat
XP_057799471.1 Pfam PF00069 Pkinase Domain 877 1045 9.2e-35 121.0 Protein kinase domain
XP_057799471.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1029 8.3e-35 121.0 Protein tyrosine and serine/threonine kinase
XP_057799472.1 Pfam PF08263 LRRNT_2 Family 33 73 1.3e-09 38.9 Leucine rich repeat N-terminal domain
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 150 172 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 174 196 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 248 269 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 272 293 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 369 390 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF13855 LRR_8 Repeat 369 427 3.8e-52 174.6 Leucine rich repeat
XP_057799472.1 Pfam PF13855 LRR_8 Repeat 440 500 3.8e-52 174.6 Leucine rich repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 441 463 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 517 539 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 566 588 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF13855 LRR_8 Repeat 566 625 3.8e-52 174.6 Leucine rich repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 591 612 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 614 635 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 663 684 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00560 LRR_1 Repeat 734 755 5.6e-65 201.9 Leucine Rich Repeat
XP_057799472.1 Pfam PF00069 Pkinase Domain 877 1146 2e-39 136.3 Protein kinase domain
XP_057799472.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1149 8.1e-40 137.5 Protein tyrosine and serine/threonine kinase
XP_057799473.1 Pfam PF08263 LRRNT_2 Family 33 73 1.3e-09 38.9 Leucine rich repeat N-terminal domain
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 150 172 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 174 196 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 248 269 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 272 293 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 369 390 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF13855 LRR_8 Repeat 369 427 3.8e-52 174.6 Leucine rich repeat
XP_057799473.1 Pfam PF13855 LRR_8 Repeat 440 500 3.8e-52 174.6 Leucine rich repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 441 463 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 517 539 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 566 588 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF13855 LRR_8 Repeat 566 625 3.8e-52 174.6 Leucine rich repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 591 612 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 614 635 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 663 684 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00560 LRR_1 Repeat 734 755 5.6e-65 201.9 Leucine Rich Repeat
XP_057799473.1 Pfam PF00069 Pkinase Domain 877 1146 2e-39 136.3 Protein kinase domain
XP_057799473.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1149 8.1e-40 137.5 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057943487.1
CATCACATCATTAACGTTCATAATTTCAAATGTGGACATAAATGTAATTCATCATTTTTTTAAAAAAATATATAATATATAATCTATTAGAAAGTAAAATTAATAGTGATGTTGATATGAAGGGCTGTGCTGCACTTGCAGGGCTCGGTCATGGTGCCAAGCGATAAGGCGCTGATCCATCCATATCATATGTGGTCGCAAAATGGAACATGACATCCAACGCCACTCCACAGCCGTCCGATGCAAATCTGCAATCACAA...
XM_057943488.1
CATCACATCATTAACGTTCATAATTTCAAATGTGGACATAAATGTAATTCATCATTTTTTTAAAAAAATATATAATATATAATCTATTAGAAAGTAAAATTAATAGTGATGTTGATATGAAGGGCTGTGCTGCACTTGCAGGGCTCGGTCATGGTGCCAAGCGATAAGGCGCTGATCCATCCATATCATATGTGGTCGCAAAATGGAACATGACATCCAACGCCACTCCACAGCCGTCCGATGCAAATCTGCAATCACAA...

CDS

4 records

下载 CDS FASTA
LOC131015207
ATGGAGAAAAACCTTTATTGCATTTTGCCTTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTACGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACAT...
LOC131015207
ATGGAGAAAAACCTTTATTGCATTTTGCCTTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTACGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACAT...

Protein

4 records

下载 Protein FASTA
XP_057799470.1
MEKNLYCILPYAFLITITFPMLSSEAKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSSSVCSWIGVTCSLRHHRVAALNLSNMALSGTIPPQLGRLSFLVSLNLKSNFFHGDLPQELSLLRRLKFISFQLNNFTGDIPPMLGQLPKLEDLSLSNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQRLQILAVQYNRLSGAIPSAIFNISTLLYMAFIDNELSGSLPTDMCRNLPFLTEIYVSYNQLSG...
XP_057799471.1
MEKNLYCILPYAFLITITFPMLSSEAKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSSSVCSWIGVTCSLRHHRVAALNLSNMALSGTIPPQLGRLSFLVSLNLKSNFFHGDLPQELSLLRRLKFISFQLNNFTGDIPPMLGQLPKLEDLSLSNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQRLQILAVQYNRLSGAIPSAIFNISTLLYMAFIDNELSGSLPTDMCRNLPFLTEIYVSYNQLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器