Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004414`

染色体: Chr03 坐标: 62305962-62309285 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004414`
名称	SmilChr03G004414
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62305962 - 62309285 / `+`

ID 对照

NCBI Gene ID	`LOC131015226`
GeneID	`131015226`
locus_tag	`-`
NCBI Name	`LOC131015226`
原始查询	`LOC131015226`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=38; qcov=1.03; evalue=3.48e-172; confidence=medium
Rice	`Os07g0121200` - identity=39.4; qcov=1.03; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131015226

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799506.1`
2	Nucleus	细胞核	0.00000	`XP_057799506.1`
3	Chromosome	染色体	0.00000	`XP_057799506.1`
4	Centromere	着丝粒	0.00000	`XP_057799506.1`
5	Chromatin	染色质	0.00000	`XP_057799506.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62305998`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B140,B20,B22
`Chr3:62306039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B47,B65,B75,C19,C58
`Chr3:62306059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B128,C31,C86
`Chr3:62306060`	`G`	`GTC`	2bp_insertion	frameshift_variant	1	B75
`Chr3:62306060`	`G`	`GTC`	2bp_insertion	CDS_variant	1	B75
`Chr3:62306112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr3:62306147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr3:62306194`	`TGG`	`T`	2bp_deletion	frameshift_variant	7	B134,B6,B85,B97,C28,C72,D6
`Chr3:62306198`	`T`	`TAC`	2bp_insertion	frameshift_variant	8	B134,B15,B6,B85,B97,C28,C72,D6
`Chr3:62306202`	`C`	`T`	EMS_canonical_SNV	stop_gained	11	B134,B49,B6,B97,C25,C26,C28,C50,C72,C87,D6
`Chr3:62306211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:62306359`	`ACT`	`A`	2bp_deletion	frameshift_variant	10	A21,A7,B6,B97,C11,C36,C47,C75,D5,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799506.1

857 aa

428

857

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 68-89 aa PF00560 LRR_1 141-162 aa PF13855 LRR_8 141-199 aa PF00560 LRR_1 216-238 aa PF00560 LRR_1 290-311 aa PF00560 LRR_1 362-383 aa PF00560 LRR_1 409-431 aa PF00560 LRR_1 433-454 aa PF00069 Pkinase 577-845 aa PF07714 PK_Tyr_Ser-Thr 579-848 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799506.1`	Pfam	`PF00560`	LRR_1	Repeat	68	89	5.1e-35	112.7	Leucine Rich Repeat
`XP_057799506.1`	Pfam	`PF00560`	LRR_1	Repeat	141	162	5.1e-35	112.7	Leucine Rich Repeat
`XP_057799506.1`	Pfam	`PF13855`	LRR_8	Repeat	141	199	9.2e-33	112.5	Leucine rich repeat
`XP_057799506.1`	Pfam	`PF00560`	LRR_1	Repeat	216	238	5.1e-35	112.7	Leucine Rich Repeat
`XP_057799506.1`	Pfam	`PF00560`	LRR_1	Repeat	290	311	5.1e-35	112.7	Leucine Rich Repeat
`XP_057799506.1`	Pfam	`PF00560`	LRR_1	Repeat	362	383	5.1e-35	112.7	Leucine Rich Repeat
`XP_057799506.1`	Pfam	`PF00560`	LRR_1	Repeat	409	431	5.1e-35	112.7	Leucine Rich Repeat
`XP_057799506.1`	Pfam	`PF00560`	LRR_1	Repeat	433	454	5.1e-35	112.7	Leucine Rich Repeat
`XP_057799506.1`	Pfam	`PF00069`	Pkinase	Domain	577	845	9.8e-39	134.0	Protein kinase domain
`XP_057799506.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	579	848	1.1e-37	130.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943523.1
AAATAAGATTTTATTAGTTTCATGACACTTTTTTTGCCAGGAATACTACCACATGAGATTGGCTATCTTCAGAGTCTGCTTACTTTTGCTGTTGAACGGAATGAGATTGCGGGCTCAATTGATTTCAATATTTTCATGAATATGTCTTCTCTGCAAACCTTAGGACTAGGGCGCAACAAATTCACGGGGAACCTTTCAAGGGATGTCGGGAATATTACCATGCTAACAAATTTGGATCTCCAAGATAACCATTTTACAGG...

CDS

1 records

下载 CDS FASTA

LOC131015226
ATGACACTTTTTTTGCCAGGAATACTACCACATGAGATTGGCTATCTTCAGAGTCTGCTTACTTTTGCTGTTGAACGGAATGAGATTGCGGGCTCAATTGATTTCAATATTTTCATGAATATGTCTTCTCTGCAAACCTTAGGACTAGGGCGCAACAAATTCACGGGGAACCTTTCAAGGGATGTCGGGAATATTACCATGCTAACAAATTTGGATCTCCAAGATAACCATTTTACAGGTCTTATTCCCATTGAATTTGG...

Protein

1 records

下载 Protein FASTA

XP_057799506.1
MTLFLPGILPHEIGYLQSLLTFAVERNEIAGSIDFNIFMNMSSLQTLGLGRNKFTGNLSRDVGNITMLTNLDLQDNHFTGLIPIEFGQLYHLETLGLLLNSLSGSIPHELFNISTLRILSLVGNALSGVLPTHLCHASPFLEELHLGRNSITGAIPNSISNCSQLTILSLPENKFSGYIPTHLGNLRHLQILQLFRNNLTQAPSSSFITSLTNCKSLTILSIDDNPLNGVIPASVGNLSSALRTFTTVNCKFSGSIPVEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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