当前解析结果
SmilChr03G004369| 统一新 Gene ID | SmilChr03G004369 |
|---|---|
| 名称 | SmilChr03G004369 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61893826 - 61897206 / + |
| NCBI Gene ID | LOC131015227 |
|---|---|
| GeneID | 131015227 |
| locus_tag | - |
| NCBI Name | LOC131015227 |
| 原始查询 | LOC131015227 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=37.5; qcov=1.01; evalue=2.08e-156; confidence=medium |
| Rice | Os11g0695000- identity=38; qcov=0.996; evalue=4.88e-167; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015227 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799507.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799507.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799507.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799507.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799507.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61894966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr3:61895102 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B6,B78,C52 |
Chr3:61895191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr3:61895240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B15,C34 |
Chr3:61895328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr3:61895353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B48,C30,D7 |
Chr3:61895363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B78 |
Chr3:61895401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr3:61895421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr3:61895437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr3:61896019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr3:61896109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799507.1PF00560
LRR_1 40-60 aa
PF00560
LRR_1 261-282 aa
PF00560
LRR_1 357-379 aa
PF13855
LRR_8 357-416 aa
PF00560
LRR_1 381-402 aa
PF00069
Pkinase 525-692 aa
PF07714
PK_Tyr_Ser-Thr 527-691 aa
PF07714
PK_Tyr_Ser-Thr 718-827 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799507.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 40 | 60 | 4.2e-25 | 83.1 | Leucine Rich Repeat |
XP_057799507.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 261 | 282 | 4.2e-25 | 83.1 | Leucine Rich Repeat |
XP_057799507.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 357 | 379 | 4.2e-25 | 83.1 | Leucine Rich Repeat |
XP_057799507.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 357 | 416 | 1.5e-21 | 76.6 | Leucine rich repeat |
XP_057799507.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 381 | 402 | 4.2e-25 | 83.1 | Leucine Rich Repeat |
XP_057799507.1 |
Pfam | PF00069 |
Pkinase | Domain | 525 | 692 | 6.2e-35 | 121.6 | Protein kinase domain |
XP_057799507.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 527 | 691 | 4.7e-35 | 121.9 | Protein tyrosine and serine/threonine kinase |
XP_057799507.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 718 | 827 | 4.7e-35 | 121.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。