Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004425`

染色体: Chr03 坐标: 62400346-62406778 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004425`
名称	SmilChr03G004425
描述	uncharacterized SmilChr03G004425
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62400346 - 62406778 / `-`

ID 对照

NCBI Gene ID	`LOC131015236`
GeneID	`131015236`
locus_tag	`-`
NCBI Name	`LOC131015236`
原始查询	`LOC131015236`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835096]; symbol=AT5G50310; hit=AT5G50310; species=arabidopsis; confidence=high
产物	Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835096]; symbol=AT5G50310; hit=AT5G50310; species=arabidopsis; confidence=high
Arabidopsis	`AT5G50310` (AT5G50310) Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835096] identity=72.8; qcov=0.983; evalue=0; confidence=high
Rice	`Os04g0483600` - identity=71.2; qcov=1.01; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01344 (Kelch_1); PF07646 (Kelch_2); PF13422 (DUF4110); PF24681 (Kelch_KLHDC2_KLHL20_DRC7); PF24981 (Beta-prop_ATRN-LZTR1)
InterPro	-
eggNOG	-
NR	GeneID:131015236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799521.1`
2	Cytoplasm	细胞质	0.80000	`XP_057799521.1`
3	Nucleoplasm	核质	0.60000	`XP_057799521.1`
4	Cytosol	细胞质基质	0.40000	`XP_057799521.1`
5	Chromosome	染色体	0.00000	`XP_057799521.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62400505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A20,B22
`Chr3:62401309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr3:62401466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B69,C62
`Chr3:62401484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B78,C37,C43
`Chr3:62401505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B49,B79,C54,C9
`Chr3:62401713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr3:62401767`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:62401770`	`C`	`CA`	1bp_insertion	frameshift_variant	4	B46,C70,C76,C81
`Chr3:62401770`	`C`	`CA`	1bp_insertion	CDS_variant	4	B46,C70,C76,C81
`Chr3:62402268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B69,C62
`Chr3:62402302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr3:62402434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,A7,B40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799521.1

665 aa

332

665

Kelch_KLHDC2_KLHL20_DRC7

Beta-prop_ATRN-LZTR1

Kelch_1

Beta-prop_ATRN-LZTR1

Kelch_1

Kelch_2

DUF4110

PF24681 Kelch_KLHDC2_KLHL20_DRC7 39-253 aa PF24981 Beta-prop_ATRN-LZTR1 86-174 aa PF01344 Kelch_1 124-171 aa PF24981 Beta-prop_ATRN-LZTR1 155-226 aa PF01344 Kelch_1 179-226 aa PF01344 Kelch_1 235-289 aa PF07646 Kelch_2 236-290 aa PF13422 DUF4110 569-653 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799521.1`	Pfam	`PF24681`	Kelch_KLHDC2_KLHL20_DRC7	Repeat	39	253	8.7e-65	218.8	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
`XP_057799521.1`	Pfam	`PF24981`	Beta-prop_ATRN-LZTR1	Repeat	86	174	2.2e-47	162.4	Attractin/LZTR1 beta-propeller
`XP_057799521.1`	Pfam	`PF01344`	Kelch_1	Repeat	124	171	8.9e-27	93.0	Kelch motif
`XP_057799521.1`	Pfam	`PF24981`	Beta-prop_ATRN-LZTR1	Repeat	155	226	2.2e-47	162.4	Attractin/LZTR1 beta-propeller
`XP_057799521.1`	Pfam	`PF01344`	Kelch_1	Repeat	179	226	8.9e-27	93.0	Kelch motif
`XP_057799521.1`	Pfam	`PF01344`	Kelch_1	Repeat	235	289	8.9e-27	93.0	Kelch motif
`XP_057799521.1`	Pfam	`PF07646`	Kelch_2	Repeat	236	290	1.4e-24	85.5	Kelch motif
`XP_057799521.1`	Pfam	`PF13422`	DUF4110	Family	569	653	3.2e-28	98.3	Domain of unknown function (DUF4110)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943538.1
GAATACCTCTGAAAATATGAACAAGAAGAAGCTTAGCACAAAACTGAGATCGAGAAATCCTTTTGTAAATAAACCCCTAAAATTCCGCCGCGAAATAAATAGCTAAAAAACTCAAAACGGAAAAAGGTTTGGTTTGAGCTCAGACGCATACACTCCTGACTCCTGAGTCAAAGAGTGAGAGAGGTCCGAGAGGAAACAGCAAACAGCGCCAGCAGCCGAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG...

CDS

1 records

下载 CDS FASTA

LOC131015236
ATGGGAAAGAAAACGAAGAAGCCTGGCAAAGGAAAAGAGAAGACGGAAAAGAAAACTGCAAAGGCGGAGGAGAAAAAGGCGCGACGTGAGTCCAAAAAAATCTCTCCCGAAGATGACATCGACGCTATTTTGTTGAATATACAAAAAGAGGAAGCGAAGAAGAAGGAAGTCCATGTTGATGATAACGTTCCAGCACCATCTCCAAGATCAAATTGTTCGCTAACTGTTAATCCCTCGAAAGAGACCGAACTCGTGCTATA...

Protein

1 records

下载 Protein FASTA

XP_057799521.1
MGKKTKKPGKGKEKTEKKTAKAEEKKARRESKKISPEDDIDAILLNIQKEEAKKKEVHVDDNVPAPSPRSNCSLTVNPSKETELVLYGGEFYNGNKTFVYGDLYRFDVEKQEWKLISSPNSPPPRSAHQAVAWKNYLYIYGGEFTSPNQERFHHYKDFWVLDLKTNQWEQLNYKGCPSPRSGHRMVLYKHKIIIFGGFYDTLREVRYYNDLHVFDLDQYKWQEIKPTPGCLWPSARSGFQFVVYQDEIYLYGGYSKEVSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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