当前解析结果
SmilChr03G004405| 统一新 Gene ID | SmilChr03G004405 |
|---|---|
| 名称 | SmilChr03G004405 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62221088 - 62224231 / + |
| NCBI Gene ID | LOC131015243 |
|---|---|
| GeneID | 131015243 |
| locus_tag | - |
| NCBI Name | LOC131015243 |
| 原始查询 | LOC131015243 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47090 (AT3G47090)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823862] identity=36.4; qcov=1.06; evalue=1.02e-125; confidence=medium |
| Rice | Os11g0208900- identity=41.8; qcov=0.993; evalue=1.02e-141; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015243 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799530.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799530.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799530.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799530.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799530.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799530.1PF13855
LRR_8 2-58 aa
PF00560
LRR_1 24-45 aa
PF00560
LRR_1 48-68 aa
PF00560
LRR_1 96-117 aa
PF00560
LRR_1 143-165 aa
PF00560
LRR_1 167-189 aa
PF00069
Pkinase 312-577 aa
PF07714
PK_Tyr_Ser-Thr 314-580 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799530.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 2 | 58 | 5.1e-18 | 65.3 | Leucine rich repeat |
XP_057799530.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 24 | 45 | 4.6e-22 | 74.1 | Leucine Rich Repeat |
XP_057799530.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 48 | 68 | 4.6e-22 | 74.1 | Leucine Rich Repeat |
XP_057799530.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 96 | 117 | 4.6e-22 | 74.1 | Leucine Rich Repeat |
XP_057799530.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 143 | 165 | 4.6e-22 | 74.1 | Leucine Rich Repeat |
XP_057799530.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 189 | 4.6e-22 | 74.1 | Leucine Rich Repeat |
XP_057799530.1 |
Pfam | PF00069 |
Pkinase | Domain | 312 | 577 | 3.5e-40 | 138.8 | Protein kinase domain |
XP_057799530.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 314 | 580 | 3.7e-39 | 135.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。