当前解析结果
SmilChr03G004384| 统一新 Gene ID | SmilChr03G004384 |
|---|---|
| 名称 | SmilChr03G004384 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62054075 - 62056403 / + |
| NCBI Gene ID | LOC131015254 |
|---|---|
| GeneID | 131015254 |
| locus_tag | - |
| NCBI Name | LOC131015254 |
| 原始查询 | LOC131015254 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=35.2; qcov=1.08; evalue=4.89e-98; confidence=medium |
| Rice | Os01g0694000- identity=38.5; qcov=1.02; evalue=1.86e-118; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015254 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799550.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799550.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799550.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799550.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799550.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62054350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B66,B85 |
Chr3:62054358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr3:62054396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr3:62054404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B125 |
Chr3:62054429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr3:62054433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B133,B24 |
Chr3:62054479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B130,B89 |
Chr3:62054482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B136,B24,B46 |
Chr3:62054491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,D10,D4 |
Chr3:62054499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr3:62054502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B74,C14 |
Chr3:62054517 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | B31,C60,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799550.1PF00560
LRR_1 17-39 aa
PF00560
LRR_1 41-62 aa
PF00069
Pkinase 185-353 aa
PF07714
PK_Tyr_Ser-Thr 187-352 aa
PF07714
PK_Tyr_Ser-Thr 380-488 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799550.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 17 | 39 | 8.4e-09 | 34.6 | Leucine Rich Repeat |
XP_057799550.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 41 | 62 | 8.4e-09 | 34.6 | Leucine Rich Repeat |
XP_057799550.1 |
Pfam | PF00069 |
Pkinase | Domain | 185 | 353 | 2.4e-36 | 126.2 | Protein kinase domain |
XP_057799550.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 187 | 352 | 8.7e-36 | 124.3 | Protein tyrosine and serine/threonine kinase |
XP_057799550.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 380 | 488 | 8.7e-36 | 124.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。