Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004333`

染色体: Chr03 坐标: 61677000-61680472 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004333`
名称	SmilChr03G004333
描述	serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61677000 - 61680472 / `-`

ID 对照

NCBI Gene ID	`LOC131015257`
GeneID	`131015257`
locus_tag	`-`
NCBI Name	`LOC131015257`
原始查询	`LOC131015257`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like
产物	serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like
Arabidopsis	`AT5G25510` (AT5G25510) Protein phosphatase 2A regulatory B subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:832626] identity=69.7; qcov=1.02; evalue=0; confidence=high
Rice	`Os05g0555100` (OsPP2A-B'kappa) - identity=62.9; qcov=1.03; evalue=0; confidence=high
GO	GO:0000159 (protein phosphatase type 2A complex); GO:0007165 (signal transduction); GO:0019888 (protein phosphatase regulator activity)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
Pfam	PF01603 (B56)
InterPro	-
eggNOG	-
NR	GeneID:131015257

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057799554.1`
2	Cytosol	细胞质基质	0.80000	`XP_057799554.1`
3	Nucleus	细胞核	0.60000	`XP_057799554.1`
4	Chromosome	染色体	0.00000	`XP_057799554.1`
5	Centromere	着丝粒	0.00000	`XP_057799554.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61677360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:61677372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:61677432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B139,B3,B5,B58,B60
`Chr3:61677443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,B64
`Chr3:61677616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr3:61677666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B63
`Chr3:61678504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:61678747`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B44,B65
`Chr3:61678978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B121,B32,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799554.1

484 aa

242

484

B56

PF01603 B56 59-468 aa

XP_057799555.1

484 aa

242

484

B56

PF01603 B56 59-468 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799554.1`	Pfam	`PF01603`	B56	Repeat	59	468	4.5e-180	599.7	Protein phosphatase 2A regulatory B subunit (B56 family)
`XP_057799555.1`	Pfam	`PF01603`	B56	Repeat	59	468	4.5e-180	599.7	Protein phosphatase 2A regulatory B subunit (B56 family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943571.1
CCCAAATGAAATTAGAAACATTTGATAAAGAGTGGACCATAAGAAGGGGAAAGAAGGTAAGAAAAAGGCGAAATCCCATGTCATGGATGATGGTGGATCTGCACTCTGCACCACTGTGAAAAAAGCACAATCATCATCATTTCCATTTCCCCCAATTCCCAATTTCCAATTTGTTTTTCCTTCGCTTCCCATTTTGAATTCTTGAAACCAAAAAAAAACAAAAACAAAAAAGAAAACAGTGATGGAATTATTGAATTGAC...

XM_057943572.1
GACCATAAGAAGGGGAAAGAAGGTAAGAAAAAGGCGAAATCCCATGTCATGGATGATGGTGGATCTGCACTCTGCACCACTGTGAAAAAAGCACAATCATCATCATTTCCATTTCCCCCAATTCCCAATTTCCAATTTGTTTTTCCTTCGCTTCCCATTTTGAATTCTTGAAACCAAAAAAAAACAAAAACAAAAAAGAAAACAGTGATGGAATTATTGAATTGACGACGCCCCTCTGTTTTTTCAGCCCATCAATGGCA...

CDS

2 records

下载 CDS FASTA

LOC131015257
ATGTGGAAACAGATTCTTGGTAAATTGCCTCGGAAATCCCCGAAATCAGATCCTGATTCTCCAAGAAGCCCTAACCCGGGGCCGAATTCATCGTCTGCTGGCAACCCTGCTGCGAAAAGAGCTTCAGCTGCAGTCTTTCCGGCCTGTGTGATTGCTGGAATCGAGCCGTTGCTCGCGTTCAAGGACGTCCCGAGCTCAGAAAAGATGAATCTCTTCATAAGTAAGCTGAGTCTCTGCTGTGTAGTGTTTGATTTCACTGA...

Protein

2 records

下载 Protein FASTA

XP_057799554.1
MWKQILGKLPRKSPKSDPDSPRSPNPGPNSSSAGNPAAKRASAAVFPACVIAGIEPLLAFKDVPSSEKMNLFISKLSLCCVVFDFTDPVKNVQEKELKRATLLELLDFVSQNPPKFTEPAILASCKMCSVNLFRVFPPSTRSSSSGSGENDNDDEPTFDPAWSHLQIVYDFLLKFVTSPSLETKVAKKYINYSFILRIIDLFDSEDPRERDCLKAILHRVYGKFMVHRPFIRKCMSSVFYRFVFETEKHNGIAELLEIFG...

XP_057799555.1
MWKQILGKLPRKSPKSDPDSPRSPNPGPNSSSAGNPAAKRASAAVFPACVIAGIEPLLAFKDVPSSEKMNLFISKLSLCCVVFDFTDPVKNVQEKELKRATLLELLDFVSQNPPKFTEPAILASCKMCSVNLFRVFPPSTRSSSSGSGENDNDDEPTFDPAWSHLQIVYDFLLKFVTSPSLETKVAKKYINYSFILRIIDLFDSEDPRERDCLKAILHRVYGKFMVHRPFIRKCMSSVFYRFVFETEKHNGIAELLEIFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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