当前解析结果
SmilChr01G002310| 统一新 Gene ID | SmilChr01G002310 |
|---|---|
| 名称 | SmilChr01G002310 |
| 描述 | homeobox-leucine zipper protein HAT4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 40072338 - 40074027 / + |
| NCBI Gene ID | LOC131015258 |
|---|---|
| GeneID | 131015258 |
| locus_tag | - |
| NCBI Name | LOC131015258 |
| 原始查询 | LOC131015258 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox-leucine zipper protein HAT4-like |
| 产物 | homeobox-leucine zipper protein HAT4-like |
| Arabidopsis | AT4G16780 (HB-2)homeobox protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:827384] identity=61.4; qcov=0.774; evalue=1.07e-102; confidence=high |
| Rice | Os10g0561800 (Oshox1)- identity=59.6; qcov=0.598; evalue=3.51e-68; confidence=medium |
| GO | GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF02183 (HALZ); PF04618 (HD-ZIP_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015258 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799559.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057799559.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057799559.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057799559.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057799559.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:40072445 |
T |
TA |
1bp_insertion | frameshift_variant | 25 | A19,A25,A5,B110,B123,B132,B133,B135,B14,B22,B37,B39,B41,B59,B76,B82,B90,B94,C3,C39,C54,C56,C63,C79,C85 |
Chr1:40072540 |
T |
TTC |
2bp_insertion | frameshift_variant | 49 | A16,A3,A6,A8,B104,B112,B129,B130,B132,B134,B14,B15,B24,B25,B28,B30,B33,B39,B42,B43,B44,B47,B53,B54,B56,B59,B63,B70,B73,B79,B8,B84,B9,B95,B96,C10,C21,C26,C4,C44,C50,C57,C64,C66,C70,C81,C83,C84,D4 |
Chr1:40072564 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | A21,B54 |
Chr1:40072564 |
AT |
A |
1bp_deletion | CDS_variant | 2 | A21,B54 |
Chr1:40072690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B94,C30,D9 |
Chr1:40072752 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B57,C51 |
Chr1:40072752 |
C |
CA |
1bp_insertion | CDS_variant | 2 | B57,C51 |
Chr1:40072954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B106,B27,B6,D3 |
Chr1:40072959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B92,C37 |
Chr1:40072998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:40073069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr1:40073584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,B68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799559.1PF04618
HD-ZIP_N 92-199 aa
PF00046
Homeodomain 223-277 aa
PF02183
HALZ 279-313 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799559.1 |
Pfam | PF04618 |
HD-ZIP_N | Domain | 92 | 199 | 3e-34 | 118.5 | HD-ZIP protein N terminus |
XP_057799559.1 |
Pfam | PF00046 |
Homeodomain | Domain | 223 | 277 | 4e-16 | 59.3 | Homeodomain |
XP_057799559.1 |
Pfam | PF02183 |
HALZ | Coiled-coil | 279 | 313 | 2.1e-11 | 44.5 | Homeobox associated leucine zipper |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。