Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004452`

染色体: Chr03 坐标: 62643119-62645997 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004452`
名称	SmilChr03G004452
描述	VAN3-binding protein
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62643119 - 62645997 / `+`

ID 对照

NCBI Gene ID	`LOC131015271`
GeneID	`131015271`
locus_tag	`-`
NCBI Name	`LOC131015271`
原始查询	`LOC131015271`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	VAN3-binding protein
产物	VAN3-binding protein
Arabidopsis	`AT4G32780` (AT4G32780) phosphoinositide binding protein [Source:NCBI gene (formerly Entrezgene);Acc:829414] identity=48.2; qcov=0.957; evalue=7.51e-63; confidence=high
Rice	`Os10g0560000` (OSJNBa0042H09.6) - identity=39.4; qcov=0.858; evalue=9.22e-32; confidence=medium
GO	-
KEGG	-
Pfam	PF05703 (Auxin_canalis); PF08458 (PH_2)
InterPro	-
eggNOG	-
NR	GeneID:131015271

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799575.1`
2	Cytosol	细胞质基质	0.40000	`XP_057799575.1`
3	Nucleus	细胞核	0.20000	`XP_057799575.1`
4	Chromosome	染色体	0.00000	`XP_057799575.1`
5	Centromere	着丝粒	0.00000	`XP_057799575.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62643594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr3:62643684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B30,B59,C8
`Chr3:62643686`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B17,B30,B73,C20,C52
`Chr3:62643707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B129,B24,B68,C26
`Chr3:62643709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C24
`Chr3:62643886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,D5
`Chr3:62643888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr3:62643897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,B125
`Chr3:62643902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B36,B66,B94,B95,C34
`Chr3:62644207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B76,B98
`Chr3:62644208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C52
`Chr3:62644246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799575.1

401 aa

200

401

Auxin_canalis

PH_2

PF05703 Auxin_canalis 33-64 aa PF05703 Auxin_canalis 82-275 aa PF08458 PH_2 299-398 aa

XP_057799576.1

401 aa

200

401

Auxin_canalis

PH_2

PF05703 Auxin_canalis 33-64 aa PF05703 Auxin_canalis 82-275 aa PF08458 PH_2 299-398 aa

XP_057799577.1

373 aa

186

373

Auxin_canalis

PH_2

PF05703 Auxin_canalis 33-64 aa PF05703 Auxin_canalis 82-275 aa PF08458 PH_2 299-344 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799575.1`	Pfam	`PF05703`	Auxin_canalis	Family	33	64	4.8e-80	270.0	Auxin canalisation
`XP_057799575.1`	Pfam	`PF05703`	Auxin_canalis	Family	82	275	4.8e-80	270.0	Auxin canalisation
`XP_057799575.1`	Pfam	`PF08458`	PH_2	Domain	299	398	3.3e-39	134.2	Plant pleckstrin homology-like region
`XP_057799576.1`	Pfam	`PF05703`	Auxin_canalis	Family	33	64	4.8e-80	270.0	Auxin canalisation
`XP_057799576.1`	Pfam	`PF05703`	Auxin_canalis	Family	82	275	4.8e-80	270.0	Auxin canalisation
`XP_057799576.1`	Pfam	`PF08458`	PH_2	Domain	299	398	3.3e-39	134.2	Plant pleckstrin homology-like region
`XP_057799577.1`	Pfam	`PF05703`	Auxin_canalis	Family	33	64	3.8e-80	270.4	Auxin canalisation
`XP_057799577.1`	Pfam	`PF05703`	Auxin_canalis	Family	82	275	3.8e-80	270.4	Auxin canalisation
`XP_057799577.1`	Pfam	`PF08458`	PH_2	Domain	299	344	1.5e-16	61.4	Plant pleckstrin homology-like region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943592.1
AAACAGTGTTAATGGAAGTTGAAAAGATCCCTTTGTAATTATGAACGCGCCGTTCAAGATAAAAAAATTAGTAAAAACTAAAGCTGAAAAAATTCAAGAAAAGAAGTGAATTTTTTTTCACAAAAGCAGACATTTTGAATGTCTTTGAAATCGAGCTTGTCCAAATCCAAACGACTCCAAAACATTGAGGAAGAAAACGTTGTGGAGTGGATTCCGGCGGTATCGTGCCCTCAGCCGGAGACCCCGACCGAGTCGATGGA...

XM_057943593.1
GCAGACATTTTGAAGTTGGGTTCAAAAGCTCTATTGGTTTCTAAATTTTTATTGGTTTAATTTTTGGGACGTTACTAATAAATAGAAGCATGCTGTTTTGTTCATTTCTATCATCATCAGCATTTTGAGCTTTATTTTGAGTAGGGTTGTAGACTTGTAGAGATGTCTTTGAAATCGAGCTTGTCCAAATCCAAACGACTCCAAAACATTGAGGAAGAAAACGTTGTGGAGTGGATTCCGGCGGTATCGTGCCCTCAGCC...

CDS

3 records

下载 CDS FASTA

LOC131015271
ATGTCTTTGAAATCGAGCTTGTCCAAATCCAAACGACTCCAAAACATTGAGGAAGAAAACGTTGTGGAGTGGATTCCGGCGGTATCGTGCCCTCAGCCGGAGACCCCGACCGAGTCGATGGAGTTTCTGGCGAGGTCGTGGAGCGTGTCGGCCGTCGAGCTCTCCAAGGCTCTTTGTAGCACCCACGGCGAGGAGAAACCCGGCCAGCCCGACCGAGGAAGCTCCTTGCTTTGTAAAAATCAACCCTTATTAGCCTCGGA...

Protein

3 records

下载 Protein FASTA

XP_057799575.1
MSLKSSLSKSKRLQNIEEENVVEWIPAVSCPQPETPTESMEFLARSWSVSAVELSKALCSTHGEEKPGQPDRGSSLLCKNQPLLASESPPESPRESDETKELLLLHQALNPEFVSHQHLLSNGTYRAMVKRKTMGRRIKDQKERKKHEIRAHNAQLHAAVSVAGVAAAVAALAASSLATPEKSNSSAKAKRKTSKKPAAIASAAALVASHCIEIAEDLGAGRDHILAVVHSAINARTNGDIMTLTAAAATALRGAATLRA...

XP_057799576.1
MSLKSSLSKSKRLQNIEEENVVEWIPAVSCPQPETPTESMEFLARSWSVSAVELSKALCSTHGEEKPGQPDRGSSLLCKNQPLLASESPPESPRESDETKELLLLHQALNPEFVSHQHLLSNGTYRAMVKRKTMGRRIKDQKERKKHEIRAHNAQLHAAVSVAGVAAAVAALAASSLATPEKSNSSAKAKRKTSKKPAAIASAAALVASHCIEIAEDLGAGRDHILAVVHSAINARTNGDIMTLTAAAATALRGAATLRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器