Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004426`

染色体: Chr03 坐标: 62407789-62411711 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004426`
名称	SmilChr03G004426
描述	serine/threonine-protein kinase AFC3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62407789 - 62411711 / `-`

ID 对照

NCBI Gene ID	`LOC131015272`
GeneID	`131015272`
locus_tag	`-`
NCBI Name	`LOC131015272`
原始查询	`LOC131015272`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase AFC3
产物	serine/threonine-protein kinase AFC3
Arabidopsis	`AT4G32660` (AME3) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829401] identity=72.5; qcov=0.981; evalue=9.36e-114; confidence=high
Rice	`Os01g0590900` - identity=78; qcov=0.995; evalue=1.07e-120; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131015272

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799578.1`
2	Nucleoplasm	核质	1.00000	`XP_057799580.1`
3	Cytoplasm	细胞质	0.80000	`XP_057799582.1`
4	Cytosol	细胞质基质	0.40000	`XP_057799578.1`
5	Nuclear body	核内小体	0.20000	`XP_057799578.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62407978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B24,C26,C28,C56
`Chr3:62408044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,B84
`Chr3:62408344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr3:62408368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B32,B84,C46
`Chr3:62408725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B49,B79,C54,C9
`Chr3:62409356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B56,B57,B96,C38
`Chr3:62409618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C28,C56
`Chr3:62409885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr3:62411186`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B56,B65,B96,C51
`Chr3:62411206`	`G`	`GC`	1bp_insertion	frameshift_variant	1	C72
`Chr3:62411206`	`G`	`GC`	1bp_insertion	CDS_variant	1	C72
`Chr3:62411219`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799578.1

400 aa

200

400

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 73-396 aa PF07714 PK_Tyr_Ser-Thr 76-306 aa

XP_057799579.1

399 aa

200

399

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 73-395 aa PF07714 PK_Tyr_Ser-Thr 76-305 aa

XP_057799580.1

335 aa

168

335

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 73-302 aa PF07714 PK_Tyr_Ser-Thr 76-306 aa

XP_057799581.1

334 aa

167

334

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 73-301 aa PF07714 PK_Tyr_Ser-Thr 76-305 aa

XP_057799582.1

215 aa

108

215

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 3-122 aa PF00069 Pkinase 3-211 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799578.1`	Pfam	`PF00069`	Pkinase	Domain	73	396	4.8e-52	177.7	Protein kinase domain
`XP_057799578.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	76	306	1.7e-19	70.9	Protein tyrosine and serine/threonine kinase
`XP_057799579.1`	Pfam	`PF00069`	Pkinase	Domain	73	395	4.2e-52	177.8	Protein kinase domain
`XP_057799579.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	76	305	1.5e-19	71.1	Protein tyrosine and serine/threonine kinase
`XP_057799580.1`	Pfam	`PF00069`	Pkinase	Domain	73	302	6.8e-45	154.2	Protein kinase domain
`XP_057799580.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	76	306	1.1e-19	71.5	Protein tyrosine and serine/threonine kinase
`XP_057799581.1`	Pfam	`PF00069`	Pkinase	Domain	73	301	6e-45	154.4	Protein kinase domain
`XP_057799581.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	76	305	9.3e-20	71.7	Protein tyrosine and serine/threonine kinase
`XP_057799582.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	3	122	3e-08	34.0	Protein tyrosine and serine/threonine kinase
`XP_057799582.1`	Pfam	`PF00069`	Pkinase	Domain	3	211	2.3e-31	109.9	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057943596.1
ATCAACTTCTTTCATAAACAAACCCATATATCTATTCAACTCTTTATCCTGACAAGAATCAGTTCGCCAACACGAGTTCTTCAACTTTTTTCCTGAAATATATTCACCTAAATTATTGGATTCTCTCAATTTCCAGAAGAATTTACTGTTGCAGTTGCAGATATTCGGTCACCCGCGTAATAATTTTTATTTTGATTGAGTATAGATACACACATACGTCTGTATTGGTGTGTGTATGTGATTGTTAGAGCTATCGGTGC...

XM_057943595.1
CAAACCCATATATCTATTCAACTCTTTATCCTGACAAGAATCAGTTCGCCAACACGAGTTCTTCAACTTTTTTCCTGAAATATATTCACCTAAATTATTGGATTCTCTCAATTTCCAGAAGAATTTACTGTTGCAGTTGCAGATATTCGGTCACCCGCAAATCAAAGTAATGGCGGAAGTGGATCAAGTGCGGCAAGCGTGGAAACGGCGCCGCTCGACGTGGGACGTCGCTCCATCGGGGCAGCTGGAGGATGATGGAA...

CDS

5 records

下载 CDS FASTA

LOC131015272
ATGGCGGAAGTGGATCAAGTGCGGCAAGCGTGGAAACGGCGCCGCTCGACGTGGGACGTCGCTCCATCGGGGCAGCTGGAGGATGATGGAAGGGATTGTGAGGATGACGAAGCTAGGGCACCGCCGGTGCTGCGGAGACACGTGTCGCCGCCGAAGAGGGATGATGATCCCAATGGGCATTACGTGTTTAGCCTCGGCGAGAATCTCACATCTAGATATAAGATACTTGGCAAGATGGGTGAAGGCACATTTGGTCGAGT...

Protein

5 records

下载 Protein FASTA

XP_057799578.1
MAEVDQVRQAWKRRRSTWDVAPSGQLEDDGRDCEDDEARAPPVLRRHVSPPKRDDDPNGHYVFSLGENLTSRYKILGKMGEGTFGRVLDCWDRHTREYVAIKIVRSIRKYRDAAMIEIDVLQRLAKYDKKESHCVKMHRWFDYRNHICIVFEKLGPSLFDFLKRNKYSPFPVDLVREFGRQLLESVAYMHDLRLIHTDLKPENILLVSSEFVKLPVCKKTSDETNFRCLPKSSAIKLIDFGSTAYDTQLHSSIVSTRHYR...

XP_057799579.1
MAEVDQVRQAWKRRRSTWDVAPSGQLEDDGRDCEDDEARAPPVLRRHVSPPKRDDDPNGHYVFSLGENLTSRYKILGKMGEGTFGRVLDCWDRHTREYVAIKIVRSIRKYRDAAMIEIDVLQRLAKYDKKESHCVKMHRWFDYRNHICIVFEKLGPSLFDFLKRNKYSPFPVDLVREFGRQLLESVAYMHDLRLIHTDLKPENILLVSSEFVKLPVCKTSDETNFRCLPKSSAIKLIDFGSTAYDTQLHSSIVSTRHYRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器