Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004535`

染色体: Chr03 坐标: 63378561-63387895 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004535`
名称	SmilChr03G004535
描述	ribosome biogenesis protein bms1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63378561 - 63387895 / `-`

ID 对照

NCBI Gene ID	`LOC131015323`
GeneID	`131015323`
locus_tag	`-`
NCBI Name	`LOC131015323`
原始查询	`LOC131015323`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosome biogenesis protein bms1-like
产物	ribosome biogenesis protein bms1-like
Arabidopsis	`AT1G06720` (AT1G06720) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837182] identity=60.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0333100` - identity=61.3; qcov=1; evalue=0; confidence=high
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000479 (endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005634 (nucleus); GO:0030686 (90S preribosome); GO:0034511 (U3 snoRNA binding); GO:0042254 (ribosome biogenesis)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF04950 (RIBIOP_C); PF08142 (AARP2CN)
InterPro	-
eggNOG	-
NR	GeneID:131015323

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799660.1`
2	Nucleolus	核仁	1.00000	`XP_057799660.1`
3	Nucleolus rim	Nucleolus rim	1.00000	`XP_057799660.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.40000	`XP_057799660.1`
5	Chromosome	染色体	0.20000	`XP_057799660.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63379412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr3:63379419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,B38,B39
`Chr3:63379704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B108,C23
`Chr3:63379767`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B40,B60,C23,C42,C62
`Chr3:63379775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr3:63380405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B113,D1
`Chr3:63381168`	`CG`	`C`	1bp_deletion	frameshift_variant	59	A20,A21,A22,A23,A25,A4,A8,B1,B100,B106,B108,B120,B124,B125,B126,B137,B140,B18,B24,B28,B3,B41,B42,B43,B44,B50,B56,B6,B61,B64,B66,B7,B70,B72,B78,B80,B87,B90,B92,B93,B96,B99,C1,C21,C23,C36,C4,C41,C43,C49,C50,C71,C73,C78,C8,C83,C85,C9,D1
`Chr3:63381269`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C55
`Chr3:63382774`	`T`	`TC`	1bp_insertion	frameshift_variant	189	A1,A10,A11,A13,A14,A18,A20,A21,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B103,B104,B106,B107,B108,B109,B11,B110,B111,B112,B113,B115,B117,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B129,B13,B130,B133,B135,B136,B137,B138,B139,B140,B15,B16,B18,B19,B21,B22,B23,B24,B28,B29,B3,B32,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B48,B50,B51,B52,B55,B56,B57,B58,B59,B6,B60,B61,B63,B64,B66,B67,B68,B7,B70,B71,B72,B73,B75,B76,B77,B78,B80,B81,B84,B85,B86,B87,B88,B89,B9,B90,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C13,C15,C17,C18,C19,C21,C22,C23,C26,C27,C29,C3,C31,C33,C34,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C49,C5,C50,C52,C53,C55,C56,C57,C58,C59,C6,C61,C62,C63,C67,C69,C7,C70,C71,C72,C73,C75,C77,C78,C8,C80,C81,C83,C85,C86,C87,C9,D1,D10,D2,D3,D6,D8,D9
`Chr3:63382855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B67,C40
`Chr3:63384780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B59,B95,C18
`Chr3:63384852`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B104,B98,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799660.1

1217 aa

608

1217

AARP2CN

RIBIOP_C

PF08142 AARP2CN 246-319 aa PF04950 RIBIOP_C 728-1049 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799660.1`	Pfam	`PF08142`	AARP2CN	Domain	246	319	1.7e-25	89.2	AARP2CN (NUC121) domain
`XP_057799660.1`	Pfam	`PF04950`	RIBIOP_C	Family	728	1049	2.2e-81	274.2	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943677.1
AATAGATACAGATTTCCTCTCTTAAACCCCAAATTCTAAAATCTTACTACTAGTTTTCAAGCATCGCCGCATCTGCGATTCCCCGCCGTAACCCGTACAACACGGAGGCGCAAGTATGGGGAAAGACGGCGACAGCGAGCAGCCACACAAGTCTCATAGGATTCGAAAGTCTGGAGCTTCCGCGAAGAAGAAATCGAAGTCGAAGCCGGCCGAAGGCCTTTCGAAGGAGCAGCAGAAGATAAACAATCCTAAGGCGTTTG...

CDS

1 records

下载 CDS FASTA

LOC131015323
ATGGGGAAAGACGGCGACAGCGAGCAGCCACACAAGTCTCATAGGATTCGAAAGTCTGGAGCTTCCGCGAAGAAGAAATCGAAGTCGAAGCCGGCCGAAGGCCTTTCGAAGGAGCAGCAGAAGATAAACAATCCTAAGGCGTTTGCGTTCACTTCTTCTGTGAAAGCCAAGCGGCTCCAATCACGAGCTACAGAGAAGGAGCAGAAAAGGCTTCATGTACCAACAATTGATCGGAATACAGGAGAACCTGCTCCATTTGT...

Protein

1 records

下载 Protein FASTA

XP_057799660.1
MGKDGDSEQPHKSHRIRKSGASAKKKSKSKPAEGLSKEQQKINNPKAFAFTSSVKAKRLQSRATEKEQKRLHVPTIDRNTGEPAPFVVVVQGPPQVGKSLLIKCLVKHYTKHNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDCAKFADLALLLIDGSYGFEMETFEFLNILQNHGFPRVMGVLTHLDKFEDVKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYTKREVHNLARFISVMKFPPLSWRASHPYIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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