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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004509

染色体: Chr03 坐标: 63176058-63179878 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004509
名称SmilChr03G004509
描述receptor kinase-like protein Xa21
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向63176058 - 63179878 / -

ID 对照

NCBI Gene IDLOC131015324
GeneID131015324
locus_tag-
NCBI NameLOC131015324
原始查询LOC131015324

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor kinase-like protein Xa21
产物receptor kinase-like protein Xa21
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=33.2; qcov=1.07; evalue=0; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=38.5; qcov=1.03; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131015324

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057799662.1
2 Nucleus 细胞核 0.00000 XP_057799662.1
3 Chromosome 染色体 0.00000 XP_057799662.1
4 Centromere 着丝粒 0.00000 XP_057799662.1
5 Chromatin 染色质 0.00000 XP_057799662.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:63176172 C T EMS_canonical_SNV CDS_variant 1 C73
Chr3:63176288 C T EMS_canonical_SNV CDS_variant 1 A16
Chr3:63176373 C T EMS_canonical_SNV CDS_variant 3 B118,B99,C80
Chr3:63176427 C T EMS_canonical_SNV CDS_variant 1 B104
Chr3:63176430 C T EMS_canonical_SNV CDS_variant 2 B64,B84
Chr3:63176438 C T EMS_canonical_SNV CDS_variant 2 C16,C41
Chr3:63176472 C T EMS_canonical_SNV CDS_variant 1 B140
Chr3:63176481 G A EMS_canonical_SNV CDS_variant 1 B140
Chr3:63176491 G A EMS_canonical_SNV CDS_variant 5 B50,B96,C42,C62,C72
Chr3:63176513 G A EMS_canonical_SNV CDS_variant 2 B134,B140
Chr3:63176549 G A EMS_canonical_SNV CDS_variant 1 C74
Chr3:63176622 C T EMS_canonical_SNV CDS_variant 4 A21,B115,B91,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799662.1
1186 aa
N
1
593
1186
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 144-204 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 242-264 aa PF00560 LRR_1 267-289 aa PF00560 LRR_1 291-313 aa PF00560 LRR_1 365-386 aa PF13855 LRR_8 365-423 aa PF00560 LRR_1 388-409 aa PF13855 LRR_8 436-496 aa PF00560 LRR_1 437-459 aa PF00560 LRR_1 513-535 aa PF00560 LRR_1 587-608 aa PF00560 LRR_1 611-631 aa PF00560 LRR_1 659-680 aa PF00560 LRR_1 706-728 aa PF00560 LRR_1 730-752 aa PF00069 Pkinase 874-1044 aa PF07714 PK_Tyr_Ser-Thr 877-1026 aa
XP_057799663.1
1155 aa
N
1
578
1155
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 144-204 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF13855 LRR_8 241-302 aa PF00560 LRR_1 242-264 aa PF00560 LRR_1 267-289 aa PF00560 LRR_1 291-313 aa PF00560 LRR_1 365-386 aa PF13855 LRR_8 365-423 aa PF00560 LRR_1 388-409 aa PF13855 LRR_8 436-496 aa PF00560 LRR_1 437-459 aa PF00560 LRR_1 513-535 aa PF00560 LRR_1 587-608 aa PF00560 LRR_1 611-631 aa PF00560 LRR_1 659-680 aa PF00560 LRR_1 706-728 aa PF00560 LRR_1 730-752 aa PF00069 Pkinase 874-1143 aa PF07714 PK_Tyr_Ser-Thr 877-1146 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799662.1 Pfam PF08263 LRRNT_2 Family 33 68 7.4e-06 26.9 Leucine rich repeat N-terminal domain
XP_057799662.1 Pfam PF13855 LRR_8 Repeat 144 204 3.1e-53 178.1 Leucine rich repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 145 167 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 169 191 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 242 264 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 267 289 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 291 313 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 365 386 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF13855 LRR_8 Repeat 365 423 3.1e-53 178.1 Leucine rich repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 388 409 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF13855 LRR_8 Repeat 436 496 3.1e-53 178.1 Leucine rich repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 437 459 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 513 535 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 587 608 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 611 631 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 659 680 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 706 728 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00560 LRR_1 Repeat 730 752 1.1e-61 192.1 Leucine Rich Repeat
XP_057799662.1 Pfam PF00069 Pkinase Domain 874 1044 3e-34 119.3 Protein kinase domain
XP_057799662.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 877 1026 8.3e-34 117.8 Protein tyrosine and serine/threonine kinase
XP_057799663.1 Pfam PF08263 LRRNT_2 Family 33 68 7.1e-06 26.9 Leucine rich repeat N-terminal domain
XP_057799663.1 Pfam PF13855 LRR_8 Repeat 144 204 2.1e-53 178.7 Leucine rich repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 145 167 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 169 191 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF13855 LRR_8 Repeat 241 302 2.1e-53 178.7 Leucine rich repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 242 264 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 267 289 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 291 313 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 365 386 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF13855 LRR_8 Repeat 365 423 2.1e-53 178.7 Leucine rich repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 388 409 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF13855 LRR_8 Repeat 436 496 2.1e-53 178.7 Leucine rich repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 437 459 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 513 535 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 587 608 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 611 631 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 659 680 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 706 728 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00560 LRR_1 Repeat 730 752 4.7e-62 193.1 Leucine Rich Repeat
XP_057799663.1 Pfam PF00069 Pkinase Domain 874 1143 6.7e-39 134.6 Protein kinase domain
XP_057799663.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 877 1146 8.6e-39 134.1 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057943679.1
ACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCAGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGG...
XM_057943680.1
TTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCAGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTC...

CDS

2 records

下载 CDS FASTA
LOC131015324
ATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCAGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...
LOC131015324
ATGGAGAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCAGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

Protein

2 records

下载 Protein FASTA
XP_057799662.1
MEKKLYCILQYAFLITITFPMLSSESKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCSWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLTNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQSLQTLYAQFNHLSGAIPSAIFNISTLVSMAFTYNELSGSLPTDICSNLPSLTAIYLSYNQLSGAIPTN...
XP_057799663.1
MEKKLYCILQYAFLITITFPMLSSESKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCSWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLTNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQSLQTLYAQFNHLSGAIPSAIFNISTLVSMAFTYNELSGSLPTDICSNLPSLTAIYLSYNQLSGAIPTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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