Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004474`

染色体: Chr03 坐标: 62846032-62865897 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004474`
名称	SmilChr03G004474
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62846032 - 62865897 / `-`

ID 对照

NCBI Gene ID	`LOC131015326`
GeneID	`131015326`
locus_tag	`-`
NCBI Name	`LOC131015326`
原始查询	`LOC131015326`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=34.3; qcov=1.06; evalue=8.79e-172; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=37.7; qcov=0.995; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131015326

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799665.1`
2	Nucleus	细胞核	0.00000	`XP_057799665.1`
3	Chromosome	染色体	0.00000	`XP_057799665.1`
4	Centromere	着丝粒	0.00000	`XP_057799665.1`
5	Chromatin	染色质	0.00000	`XP_057799665.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62847620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B63,B99,C48
`Chr3:62847676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B130,C54
`Chr3:62847706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr3:62847709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C19,C56
`Chr3:62847716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr3:62847729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B63,C54
`Chr3:62847730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B33,B63,B76,C54
`Chr3:62847760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B8,C18,C53,D4
`Chr3:62847782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B20,B78,C47
`Chr3:62847834`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,B38,C35
`Chr3:62847900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B42,B50,B8,C72,D4
`Chr3:62847910`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799665.1

1064 aa

532

1064

LRRNT_2

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-68 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 266-289 aa PF00560 LRR_1 291-313 aa PF00560 LRR_1 365-386 aa PF13855 LRR_8 365-423 aa PF00560 LRR_1 438-459 aa PF13855 LRR_8 438-496 aa PF00560 LRR_1 461-483 aa PF00560 LRR_1 513-535 aa PF00560 LRR_1 610-631 aa PF00560 LRR_1 659-680 aa PF00560 LRR_1 706-728 aa PF13855 LRR_8 706-765 aa PF00560 LRR_1 730-751 aa PF00069 Pkinase 874-1042 aa PF07714 PK_Tyr_Ser-Thr 877-1026 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799665.1`	Pfam	`PF08263`	LRRNT_2	Family	33	68	7.3e-06	26.9	Leucine rich repeat N-terminal domain
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	266	289	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	291	313	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	365	386	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF13855`	LRR_8	Repeat	365	423	3.3e-50	168.4	Leucine rich repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	438	459	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF13855`	LRR_8	Repeat	438	496	3.3e-50	168.4	Leucine rich repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	461	483	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	513	535	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	610	631	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	659	680	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	706	728	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF13855`	LRR_8	Repeat	706	765	3.3e-50	168.4	Leucine rich repeat
`XP_057799665.1`	Pfam	`PF00560`	LRR_1	Repeat	730	751	1.1e-59	186.0	Leucine Rich Repeat
`XP_057799665.1`	Pfam	`PF00069`	Pkinase	Domain	874	1042	1.9e-30	106.9	Protein kinase domain
`XP_057799665.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	877	1026	4.4e-27	95.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943682.1
ATACAATCACAATTTGCAGCCATGGAGATAAAGCTTCATTGCATTTTTGCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTC...

CDS

1 records

下载 CDS FASTA

LOC131015326
ATGGAGATAAAGCTTCATTGCATTTTTGCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

Protein

1 records

下载 Protein FASTA

XP_057799665.1
MEIKLHCIFAYAFLITITFPMLSSESKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSNMALSATIPPQLGRLSFLVSLDLSNNLFYGDLPQELSLLRRLKFISFRLNHFTGDIPPMLGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLSFNSLSGEIPKEFGRLQSLQTLVVQFNRLSGAIPSAIFNISTLVAIALRTNELSGSLPIDMCRNLPFLAGIYLSENQLSGAIPTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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