Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004591`

染色体: Chr03 坐标: 63741001-63747383 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004591`
名称	SmilChr03G004591
描述	probable serine/threonine-protein kinase SIS8
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63741001 - 63747383 / `-`

ID 对照

NCBI Gene ID	`LOC131015331`
GeneID	`131015331`
locus_tag	`-`
NCBI Name	`LOC131015331`
原始查询	`LOC131015331`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase SIS8
产物	probable serine/threonine-protein kinase SIS8
Arabidopsis	`AT5G11850` (AT5G11850) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831058] identity=49.8; qcov=1.1; evalue=0; confidence=high
Rice	`Os03g0160100` (ACDR1) - identity=63.4; qcov=0.438; evalue=3.87e-142; confidence=low
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14381 (EDR1_CTR1_ARMC3_pept)
InterPro	-
eggNOG	-
NR	GeneID:131015331

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799671.1`
2	Cytoplasm	细胞质	0.60000	`XP_057799671.1`
3	Cytosol	细胞质基质	0.40000	`XP_057799671.1`
4	Nucleus	细胞核	0.00000	`XP_057799671.1`
5	Chromosome	染色体	0.00000	`XP_057799671.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63741473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr3:63741483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr3:63741507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,B37,B62
`Chr3:63741526`	`G`	`A`	EMS_canonical_SNV	stop_gained	6	A25,B19,B42,C31,C38,C70
`Chr3:63741558`	`T`	`TG`	1bp_insertion	frameshift_variant	4	B134,B65,B85,B96
`Chr3:63741558`	`T`	`TG`	1bp_insertion	CDS_variant	4	B134,B65,B85,B96
`Chr3:63741718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:63741753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:63741754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C79
`Chr3:63741761`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	C52
`Chr3:63741761`	`TCG`	`T`	2bp_deletion	CDS_variant	1	C52
`Chr3:63741763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799671.1

800 aa

400

800

EDR1_CTR1_ARMC3_pept

PK_Tyr_Ser-Thr

Pkinase

PF14381 EDR1_CTR1_ARMC3_pept 123-327 aa PF07714 PK_Tyr_Ser-Thr 528-780 aa PF00069 Pkinase 529-777 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799671.1`	Pfam	`PF14381`	EDR1_CTR1_ARMC3_pept	Domain	123	327	2.2e-70	237.3	EDR1/CTR1/ARMC3, peptidase-like
`XP_057799671.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	528	780	9.7e-66	222.4	Protein tyrosine and serine/threonine kinase
`XP_057799671.1`	Pfam	`PF00069`	Pkinase	Domain	529	777	7.8e-55	186.8	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943688.1
CATACAGGCAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGCCTGGTTTGGAGGGAAGCAATAAGTAAATATATTTATTCCCCACAGATACAGTTTAGCTTGACGATGAAGATTCATTGCTCTCACACTCCCTTCCACTTCACCCACCGCTCCGCACTTCCACCCCTAAACCCTAATCAATTCGCACTCAATCCAATCCGCCACCTCTAGATTTCTATTTCCTGCGATTTTGTATCATATAATTTGTGTTTTTAA...

CDS

1 records

下载 CDS FASTA

LOC131015331
ATGTCGAAGATGAAACACTTGCTGCGGAAGCTGCACATCGGCGATCACCAAAACCTGGGGCGGCAACCGCCCCCGCCCGTGCTCGATCAGCCAGCTCAAACGGCGTCGTCTCAGCTGTCGGCCTCGTCGTCGCCGTCGCCGTCCCCCTCCCCGTCGCCGCTGCCCGATTTGCCGCAGGCGGCGTCGTCTTCGTCGGAGAACGAGGGCTCGGGCACCAATTTCAATTACCTCGAGGAGGAATTCCAAATGCAATTGGCGCT...

Protein

1 records

下载 Protein FASTA

XP_057799671.1
MSKMKHLLRKLHIGDHQNLGRQPPPPVLDQPAQTASSQLSASSSPSPSPSPSPLPDLPQAASSSSENEGSGTNFNYLEEEFQMQLALAISVSDPGQTCVDSETAQINAVKQISLGRSPSQSLAEFLSLRYWSCNVVNYDEKVIDGFYDVCGIDSSLMVQTKMPSLVDLEAISVLNNVDFEVVLVNRGADLELRRLEEIVHFMSIECLALNTSQSTSSLVQKIADLIVERMGGPVSDVEEMFWRWRARSQELRVNFNTVIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器