Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004600`

染色体: Chr03 坐标: 63791313-63793752 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004600`
名称	SmilChr03G004600
描述	uncharacterized SmilChr03G004600
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63791313 - 63793752 / `-`

ID 对照

NCBI Gene ID	`LOC131015344`
GeneID	`131015344`
locus_tag	`-`
NCBI Name	`LOC131015344`
原始查询	`LOC131015344`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low
产物	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081]; symbol=AT3G59120; hit=AT3G59120; species=arabidopsis; confidence=low
Arabidopsis	`AT3G59120` (AT3G59120) Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:825081] identity=28.2; qcov=0.945; evalue=7.1e-38; confidence=low
Rice	`Os07g0610200` - identity=29.8; qcov=0.332; evalue=3.06e-10; confidence=low
GO	-
KEGG	-
Pfam	PF03107 (C1_2)
InterPro	-
eggNOG	-
NR	GeneID:131015344

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057799696.1`
2	Nucleus	细胞核	0.20000	`XP_057799696.1`
3	Vacuole	液泡	0.20000	`XP_057799696.1`
4	Chromosome	染色体	0.00000	`XP_057799696.1`
5	Centromere	着丝粒	0.00000	`XP_057799696.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63791441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C15
`Chr3:63791456`	`T`	`TC`	1bp_insertion	frameshift_variant	11	A4,B104,B126,B33,C1,C26,C27,C34,C39,C69,D3
`Chr3:63791479`	`G`	`GT`	1bp_insertion	frameshift_variant	9	B17,B28,B47,B67,C16,C54,C64,C66,C80
`Chr3:63791483`	`TA`	`T`	1bp_deletion	frameshift_variant	9	B17,B28,B47,B67,C16,C54,C64,C66,C80
`Chr3:63791526`	`G`	`GCT`	2bp_insertion	frameshift_variant	36	A16,A2,A7,B102,B109,B118,B119,B122,B127,B131,B132,B31,B36,B38,B44,B53,B86,B94,B95,B96,B97,B98,C10,C12,C14,C16,C2,C24,C33,C35,C44,C50,C59,D1,D3,D8
`Chr3:63791534`	`T`	`TA`	1bp_insertion	frameshift_variant	13	B102,B17,B31,B36,B47,B67,B94,C16,C33,C54,C64,C66,C80
`Chr3:63791539`	`A`	`AC`	1bp_insertion	frameshift_variant	14	B102,B123,B17,B31,B36,B47,B67,B94,C16,C33,C54,C64,C66,C80
`Chr3:63791557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,B61,C69
`Chr3:63791660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C61
`Chr3:63791683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B59,C1,C41,C50
`Chr3:63791692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr3:63791701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B89

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799696.1

657 aa

328

657

C1_2

PF03107 C1_2 23-67 aa PF03107 C1_2 167-213 aa PF03107 C1_2 223-273 aa PF03107 C1_2 413-459 aa PF03107 C1_2 528-576 aa

XP_057799697.1

656 aa

328

656

C1_2

PF03107 C1_2 23-67 aa PF03107 C1_2 167-213 aa PF03107 C1_2 223-273 aa PF03107 C1_2 412-458 aa PF03107 C1_2 527-575 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799696.1`	Pfam	`PF03107`	C1_2	Domain	23	67	1.3e-49	167.0	C1 domain
`XP_057799696.1`	Pfam	`PF03107`	C1_2	Domain	167	213	1.3e-49	167.0	C1 domain
`XP_057799696.1`	Pfam	`PF03107`	C1_2	Domain	223	273	1.3e-49	167.0	C1 domain
`XP_057799696.1`	Pfam	`PF03107`	C1_2	Domain	413	459	1.3e-49	167.0	C1 domain
`XP_057799696.1`	Pfam	`PF03107`	C1_2	Domain	528	576	1.3e-49	167.0	C1 domain
`XP_057799697.1`	Pfam	`PF03107`	C1_2	Domain	23	67	1.3e-49	167.0	C1 domain
`XP_057799697.1`	Pfam	`PF03107`	C1_2	Domain	167	213	1.3e-49	167.0	C1 domain
`XP_057799697.1`	Pfam	`PF03107`	C1_2	Domain	223	273	1.3e-49	167.0	C1 domain
`XP_057799697.1`	Pfam	`PF03107`	C1_2	Domain	412	458	1.3e-49	167.0	C1 domain
`XP_057799697.1`	Pfam	`PF03107`	C1_2	Domain	527	575	1.3e-49	167.0	C1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943713.1
TCACACACACACACACACACGTATACAATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGACGAGGAGGAGACGAAGGTTGTTCATCATTGGAGCCACGAGCATCGTCTTACTCTAGTGGAACCTCGTATAGGAAAAGGATGTTTTGGCTGTGGAAAGCCTTTTAATGGAGGAGAGAAAGCTTATGCATGTAGATGTTTCACTGATATCGTATTTGATGAAGAATGTTTGGGAATGCCGAGGAAGATTAGACACGCAAT...

XM_057943714.1
TCACACACACACACACACACGTATACAATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGACGAGGAGGAGACGAAGGTTGTTCATCATTGGAGCCACGAGCATCGTCTTACTCTAGTGGAACCTCGTATAGGAAAAGGATGTTTTGGCTGTGGAAAGCCTTTTAATGGAGGAGAGAAAGCTTATGCATGTAGATGTTTCACTGATATCGTATTTGATGAAGAATGTTTGGGAATGCCGAGGAAGATTAGACACGCAAT...

CDS

2 records

下载 CDS FASTA

LOC131015344
ATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGACGAGGAGGAGACGAAGGTTGTTCATCATTGGAGCCACGAGCATCGTCTTACTCTAGTGGAACCTCGTATAGGAAAAGGATGTTTTGGCTGTGGAAAGCCTTTTAATGGAGGAGAGAAAGCTTATGCATGTAGATGTTTCACTGATATCGTATTTGATGAAGAATGTTTGGGAATGCCGAGGAAGATTAGACACGCAATGCACCCACAACACATACTCACTCATCA...

Protein

2 records

下载 Protein FASTA

XP_057799696.1
MSGKENKIEEEDEEETKVVHHWSHEHRLTLVEPRIGKGCFGCGKPFNGGEKAYACRCFTDIVFDEECLGMPRKIRHAMHPQHILTHHVFSHYDYNDGTLAGKLCAICESSLINQRSFRTNTEGSIFYKCTRAECMLWMHMRCAQGSDMMYDAADDDDDEQHRTIDHPSHPNHGLKLVRRSCRFKCDACGITRGVKSYMCCIANCQYWIHKSCASLPQTIESEYHSHSLSLSFHVPPRYMKRDLKCDVCGKYLPSKYWIYH...

XP_057799697.1
MSGKENKIEEEDEEETKVVHHWSHEHRLTLVEPRIGKGCFGCGKPFNGGEKAYACRCFTDIVFDEECLGMPRKIRHAMHPQHILTHHVFSHYDYNDGTLAGKLCAICESSLINQRSFRTNTEGSIFYKCTRAECMLWMHMRCAQGSDMMYDAADDDDDEQHRTIDHPSHPNHGLKLVRRSCRFKCDACGITRGVKSYMCCIANCQYWIHKSCASLPQTIESEYHSHSLSLSFHVPPRYMKRDLKCDVCGKYLPSKYWIYH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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