当前解析结果
SmilChr03G004538| 统一新 Gene ID | SmilChr03G004538 |
|---|---|
| 名称 | SmilChr03G004538 |
| 描述 | casein kinase 1-like protein HD16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63403026 - 63407872 / - |
| NCBI Gene ID | LOC131015352 |
|---|---|
| GeneID | 131015352 |
| locus_tag | - |
| NCBI Name | LOC131015352 |
| 原始查询 | LOC131015352 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | casein kinase 1-like protein HD16 |
| 产物 | casein kinase 1-like protein HD16 |
| Arabidopsis | AT2G25760 (AT2G25760)Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817118] identity=80.3; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0200500- identity=80.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal); PF24289 (DUF7477) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015352 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057799709.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057799709.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057799709.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799709.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799709.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63403453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B1,B122,B24,B78 |
Chr3:63403479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr3:63403589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:63403645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C55 |
Chr3:63403858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:63403885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B114,B86 |
Chr3:63404574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr3:63404676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B1,B122,B24,B78 |
Chr3:63404877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr3:63404878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:63404943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr3:63404974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B62,B67,B98,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799709.1PF00069
Pkinase 38-272 aa
PF07714
PK_Tyr_Ser-Thr 40-202 aa
PF17667
Pkinase_fungal 144-249 aa
PF24289
DUF7477 338-605 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799709.1 |
Pfam | PF00069 |
Pkinase | Domain | 38 | 272 | 1.9e-16 | 61.0 | Protein kinase domain |
XP_057799709.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 40 | 202 | 9.9e-07 | 29.0 | Protein tyrosine and serine/threonine kinase |
XP_057799709.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 144 | 249 | 2.7e-07 | 30.4 | Fungal protein kinase |
XP_057799709.1 |
Pfam | PF24289 |
DUF7477 | Repeat | 338 | 605 | 7.6e-163 | 540.8 | Domain of unknown function (DUF7477) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。