当前解析结果
SmilChr01G002320| 统一新 Gene ID | SmilChr01G002320 |
|---|---|
| 名称 | SmilChr01G002320 |
| 描述 | homeobox-leucine zipper protein HAT4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 40264813 - 40266502 / + |
| NCBI Gene ID | LOC131015372 |
|---|---|
| GeneID | 131015372 |
| locus_tag | - |
| NCBI Name | LOC131015372 |
| 原始查询 | LOC131015372 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox-leucine zipper protein HAT4-like |
| 产物 | homeobox-leucine zipper protein HAT4-like |
| Arabidopsis | AT4G16780 (HB-2)homeobox protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:827384] identity=61; qcov=0.766; evalue=4.11e-102; confidence=high |
| Rice | Os04g0548700 (Oshox17)- identity=75; qcov=0.395; evalue=1.47e-66; confidence=low |
| GO | GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF02183 (HALZ); PF04618 (HD-ZIP_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015372 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799739.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057799739.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057799739.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057799739.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057799739.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:40264901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr1:40264933 |
T |
TA |
1bp_insertion | frameshift_variant | 46 | A19,A22,A24,A25,A5,A9,B101,B114,B12,B120,B123,B133,B135,B139,B14,B140,B16,B22,B26,B3,B35,B37,B38,B40,B45,B53,B57,B60,B61,B65,B76,B78,B82,B83,B94,B99,C13,C24,C3,C31,C39,C43,C56,C63,C79,C85 |
Chr1:40264966 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B56,B96 |
Chr1:40264966 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B56,B96 |
Chr1:40265028 |
T |
TTC |
2bp_insertion | frameshift_variant | 15 | B104,B132,B134,B26,B38,B43,B50,B53,B64,B96,C19,C4,C50,C83,D1 |
Chr1:40265240 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | B111,B118,B128,B57,B80,C27,C51,C7,C79,C84 |
Chr1:40265242 |
C |
CAA |
2bp_insertion | frameshift_variant | 10 | B111,B118,B128,B57,B80,C27,C51,C7,C79,C84 |
Chr1:40265447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B90,B92,C37 |
Chr1:40265486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:40265841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr1:40265871 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr1:40266068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799739.1PF04618
HD-ZIP_N 97-203 aa
PF00046
Homeodomain 227-281 aa
PF02183
HALZ 283-317 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799739.1 |
Pfam | PF04618 |
HD-ZIP_N | Domain | 97 | 203 | 2.2e-33 | 115.7 | HD-ZIP protein N terminus |
XP_057799739.1 |
Pfam | PF00046 |
Homeodomain | Domain | 227 | 281 | 4.1e-16 | 59.3 | Homeodomain |
XP_057799739.1 |
Pfam | PF02183 |
HALZ | Coiled-coil | 283 | 317 | 2.1e-11 | 44.5 | Homeobox associated leucine zipper |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。