当前解析结果
SmilChr03G004559| 统一新 Gene ID | SmilChr03G004559 |
|---|---|
| 名称 | SmilChr03G004559 |
| 描述 | ATP-dependent 6-phosphofructokinase 6-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63546477 - 63551643 / - |
| NCBI Gene ID | LOC131015373 |
|---|---|
| GeneID | 131015373 |
| locus_tag | - |
| NCBI Name | LOC131015373 |
| 原始查询 | LOC131015373 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent 6-phosphofructokinase 6-like |
| 产物 | ATP-dependent 6-phosphofructokinase 6-like |
| Arabidopsis | AT4G26270 (PFK3)phosphofructokinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:828733] identity=80.4; qcov=0.975; evalue=0; confidence=high |
| Rice | Os01g0191700 (OsPFK01)- identity=76.9; qcov=0.953; evalue=0; confidence=high |
| GO | GO:0003872 (6-phosphofructokinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006002 (fructose 6-phosphate metabolic process); GO:0006096 (glycolytic process) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00365 (PFK) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015373 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057799735.1 |
| 2 | Mitochondrion | 线粒体 | 0.20000 | XP_057799735.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799735.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799735.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799735.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63546843 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B91,C1 |
Chr3:63546843 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B91,C1 |
Chr3:63546884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,D4 |
Chr3:63546885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B19,C35 |
Chr3:63547599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B13,B35,B55 |
Chr3:63547626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B77 |
Chr3:63547811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B13,B35,B55 |
Chr3:63548448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr3:63549715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799735.1PF00365
PFK 94-396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799735.1 |
Pfam | PF00365 |
PFK | Domain | 94 | 396 | 6.5e-65 | 220.0 | Phosphofructokinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。