Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004609`

染色体: Chr03 坐标: 63826683-63836556 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004609`
名称	SmilChr03G004609
描述	UDP-sulfoquinovose synthase, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63826683 - 63836556 / `+`

ID 对照

NCBI Gene ID	`LOC131015374`
GeneID	`131015374`
locus_tag	`-`
NCBI Name	`LOC131015374`
原始查询	`LOC131015374`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-sulfoquinovose synthase, chloroplastic
产物	UDP-sulfoquinovose synthase%2C chloroplastic
Arabidopsis	`AT4G33030` (SQD1) sulfoquinovosyldiacylglycerol 1 [Source:NCBI gene (formerly Entrezgene);Acc:829440] identity=83.5; qcov=0.894; evalue=0; confidence=high
Rice	`Os05g0387200` - identity=79; qcov=1; evalue=0; confidence=high
GO	GO:0009247 (glycolipid biosynthetic process); GO:0046506 (sulfolipid biosynthetic process); GO:0046507 (UDPsulfoquinovose synthase activity)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00566 (Sulfoquinovose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01370 (Epimerase); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131015374

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057799736.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057799736.1`
3	Nucleus	细胞核	0.00000	`XP_057799736.1`
4	Chromosome	染色体	0.00000	`XP_057799736.1`
5	Centromere	着丝粒	0.00000	`XP_057799736.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63834496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr3:63834531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:63834548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C24,C46
`Chr3:63834665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr3:63834675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B84
`Chr3:63834686`	`C`	`CGG`	2bp_insertion	frameshift_variant	1	B26
`Chr3:63834686`	`C`	`CGG`	2bp_insertion	CDS_variant	1	B26
`Chr3:63834737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr3:63834816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B35,B55,B84
`Chr3:63834841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B72
`Chr3:63834892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:63834955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C28,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799736.1

481 aa

240

481

Epimerase

GDP_Man_Dehyd

PF01370 Epimerase 91-379 aa PF16363 GDP_Man_Dehyd 92-400 aa

XP_057799737.1

481 aa

240

481

Epimerase

GDP_Man_Dehyd

PF01370 Epimerase 91-379 aa PF16363 GDP_Man_Dehyd 92-400 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799736.1`	Pfam	`PF01370`	Epimerase	Family	91	379	2.3e-23	83.6	NAD dependent epimerase/dehydratase family
`XP_057799736.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	92	400	6.8e-18	65.9	GDP-mannose 4,6 dehydratase
`XP_057799737.1`	Pfam	`PF01370`	Epimerase	Family	91	379	2.3e-23	83.6	NAD dependent epimerase/dehydratase family
`XP_057799737.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	92	400	6.8e-18	65.9	GDP-mannose 4,6 dehydratase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943754.1
TAAAAAAGTACTCCAGCTATTAATCATTCAATTAATCAAGATAGGAAATACTATTTTGATCATCATTCATCATCGTCATATAGAGGTATAGATACGGTTTTGGTCGAAGCTAGCATCGTATGGCGCATGCTGCTTTGGTGTCTTGTTCTTTAAACCTCTCCTTGGGCAGCAGGTCGTGCAGCAAGCCTTCGACCCATCTTACACCCTCTGTGTCTGTGAGTTTACGGATTTCTGGATCACCGTTCCAAAGGATTCCTCTC...

XM_057943753.1
AAATCTTGAAAAAAAGAAGAATATCCATTTTGATTTCTCCTTTTATGCTACTGAAGCTCGAACTCATATAAAAAAGTACTCCAGCTATTAATCATTCAATTAATCAAGATAGGGAATACTATTTTGATCATCATTCAACACCGTCATATAAAGGTATAGATACGGTTTTGGTCGAAGCTAGCATCGTATGGCGCATGCTGCTTTGGTGTCTTGTTCTTTAAACCTCTCCTTGGGCAGCAGGTCGTGCAGCAAGCCTTCGA...

CDS

2 records

下载 CDS FASTA

LOC131015374
ATGGCGCATGCTGCTTTGGTGTCTTGTTCTTTAAACCTCTCCTTGGGCAGCAGGTCGTGCAGCAAGCCTTCGACCCATCTTACACCCTCTGTGTCTGTGAGTTTACGGATTTCTGGATCACCGTTCCAAAGGATTCCTCTCAAGGTCGATAAAAGGTTGCAGAGATGCCGGACTGTCTATGCTATGGCTGTTTCAATGGGTCAAGAAACGAGGGTTCAGCCTGGATCAGGGTCCGATCACAGCTCTAACGAAGCTTCCTC...

Protein

2 records

下载 Protein FASTA

XP_057799736.1
MAHAALVSCSLNLSLGSRSCSKPSTHLTPSVSVSLRISGSPFQRIPLKVDKRLQRCRTVYAMAVSMGQETRVQPGSGSDHSSNEASSPKKVMVIGGDGYCGWATSLHLSNKNYEVAVVDNLVRRSFDHQLGLDSLTPIASIHNRIRRWKSLTGKDIGLYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEDCHLVKLGTMGEYGTPNIDIEEGFITITHNGRTDTLP...

XP_057799737.1
MAHAALVSCSLNLSLGSRSCSKPSTHLTPSVSVSLRISGSPFQRIPLKVDKRLQRCRTVYAMAVSMGQETRVQPGSGSDHSSNEASSPKKVMVIGGDGYCGWATSLHLSNKNYEVAVVDNLVRRSFDHQLGLDSLTPIASIHNRIRRWKSLTGKDIGLYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEDCHLVKLGTMGEYGTPNIDIEEGFITITHNGRTDTLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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