Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004523`

染色体: Chr03 坐标: 63287006-63289063 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004523`
名称	SmilChr03G004523
描述	uncharacterized SmilChr03G004523
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63287006 - 63289063 / `+`

ID 对照

NCBI Gene ID	`LOC131015378`
GeneID	`131015378`
locus_tag	`-`
NCBI Name	`LOC131015378`
原始查询	`LOC131015378`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	late embryosis abundant protein-related / LEA protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821477]; symbol=AT3G19430; hit=AT3G19430; species=arabidopsis; confidence=high
产物	late embryosis abundant protein-related / LEA protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821477]; symbol=AT3G19430; hit=AT3G19430; species=arabidopsis; confidence=high
Arabidopsis	`AT3G19430` (AT3G19430) late embryosis abundant protein-related / LEA protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821477] identity=59.2; qcov=0.677; evalue=2.68e-128; confidence=high
Rice	`Os05g0552600` - identity=52.4; qcov=0.629; evalue=4.07e-107; confidence=high
GO	-
KEGG	-
Pfam	PF06830 (Root_cap)
InterPro	-
eggNOG	-
NR	GeneID:131015378

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057799742.1`
2	Cell wall	细胞壁	0.40000	`XP_057799742.1`
3	Nucleus	细胞核	0.00000	`XP_057799742.1`
4	Chromosome	染色体	0.00000	`XP_057799742.1`
5	Centromere	着丝粒	0.00000	`XP_057799742.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63287290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B85
`Chr3:63287316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr3:63287331`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C11,C50,C58,C69
`Chr3:63287559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:63287571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr3:63287759`	`CA`	`C`	1bp_deletion	frameshift_variant	21	A5,B109,B121,B17,B2,B20,B3,B52,B53,B78,B80,B94,B95,C2,C24,C45,C53,C58,C79,C82,C87
`Chr3:63287761`	`CCA`	`C`	2bp_deletion	frameshift_variant	21	A5,B109,B121,B17,B2,B20,B3,B52,B53,B78,B80,B94,B95,C2,C24,C45,C53,C58,C79,C82,C87
`Chr3:63287781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:63287796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr3:63287847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C11,C50,C58,C69
`Chr3:63287910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,B45,B85
`Chr3:63287913`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799742.1

474 aa

237

474

Root_cap

PF06830 Root_cap 387-443 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799742.1`	Pfam	`PF06830`	Root_cap	Family	387	443	1.4e-28	99.5	Root cap

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943759.1
ATTTCTCCCATTTTTACGTAAAAATCAAAGCTTCTAAAACAAAACTCCACATGAATTCCTCAATGAAGAGAGAAAACTTGAACTACAAAAAAAGATCACGTATTATTACATCTCAAACAGCTAATTCTAGCTAGATTCAAGGCCACATGATCCACCATTTCTCTACCTCTATAAAACAAGAACATCATGCAGTAGTCAAGAACAACACCACAATCACATAAAAACACACACTACCATATTGAGATCGCATATCAGAAGCC...

CDS

1 records

下载 CDS FASTA

LOC131015378
ATGCTCCGCCTCGTTTTGTCGGCCGTCGTCCTCCTCTTGGTGGCCTCGCCGCAGGGGGCATCCGCCGCCGGACCAAAGCCCAAGAAGGTCCAGTGCAAAAACAAGAACTACCCCACATGCCTCAACAAGGATCTCTACTGCCCCGACACGTGCGCTCGAGACTGCCTCGTCGACTGCTCGACCTGCCAGCCCGTCTGCCCGCCATCGCCTCCCATTCCGCCGCGTAAGGTGAGTAAAGTTAAGTGCAAGGACAAGAAATA...

Protein

1 records

下载 Protein FASTA

XP_057799742.1
MLRLVLSAVVLLLVASPQGASAAGPKPKKVQCKNKNYPTCLNKDLYCPDTCARDCLVDCSTCQPVCPPSPPIPPRKVSKVKCKDKKYKKTCSQQLLCPDACPDTCVADCVACRAVCPALPPTPSYSPPPPPPVVTPSPPPPPPVVTPSPPPPPPVVTPSPPPPPPPVVTPSPPPEAAGGKRVRCRNKNFPSCYLEEHRCPDACPETCAVDCATCSPVCNCDRPGAVCQDPRFVGADGITFYFHGKKDSDFCIVSDTNLHI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器