当前解析结果
SmilChr03G004660| 统一新 Gene ID | SmilChr03G004660 |
|---|---|
| 名称 | SmilChr03G004660 |
| 描述 | serine/threonine-protein kinase STY17-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64087967 - 64091188 / + |
| NCBI Gene ID | LOC131015382 |
|---|---|
| GeneID | 131015382 |
| locus_tag | - |
| NCBI Name | LOC131015382 |
| 原始查询 | LOC131015382 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase STY17-like |
| 产物 | serine/threonine-protein kinase STY17-like |
| Arabidopsis | AT4G35780 (STY17)ACT-like protein tyrosine kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829731] identity=39.1; qcov=0.645; evalue=8.64e-52; confidence=medium |
| Rice | Os02g0120100 (OsACTPK1)- identity=36.8; qcov=0.708; evalue=1.54e-51; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015382 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057799746.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057799746.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057799746.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057799746.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799746.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64088127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C8 |
Chr3:64088197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B140,B91,C29,C44 |
Chr3:64088612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr3:64088806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,C9,D7 |
Chr3:64088853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr3:64089613 |
TC |
T |
1bp_deletion | frameshift_variant | 7 | B16,B26,B5,B76,C45,C79,D2 |
Chr3:64089617 |
A |
AG |
1bp_insertion | frameshift_variant | 7 | B16,B26,B5,B76,C45,C79,D2 |
Chr3:64089618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:64089623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C4 |
Chr3:64089701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:64089718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:64089732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C70,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799746.1PF07714
PK_Tyr_Ser-Thr 186-444 aa
PF00069
Pkinase 187-441 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799746.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 186 | 444 | 1.6e-41 | 143.1 | Protein tyrosine and serine/threonine kinase |
XP_057799746.1 |
Pfam | PF00069 |
Pkinase | Domain | 187 | 441 | 3.4e-43 | 148.7 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。