Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004649`

染色体: Chr03 坐标: 64035093-64038113 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004649`
名称	SmilChr03G004649
描述	ankyrin repeat-containing protein BDA1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64035093 - 64038113 / `-`

ID 对照

NCBI Gene ID	`LOC131015386`
GeneID	`131015386`
locus_tag	`-`
NCBI Name	`LOC131015386`
原始查询	`LOC131015386`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein BDA1-like
产物	ankyrin repeat-containing protein BDA1-like
Arabidopsis	`AT4G10720` (AT4G10720) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=28.4; qcov=0.92; evalue=1.67e-42; confidence=low
Rice	`Os11g0182900` - identity=26.8; qcov=0.943; evalue=6.4e-28; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:131015386

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799749.1`
2	Nucleus	细胞核	0.00000	`XP_057799749.1`
3	Chromosome	染色体	0.00000	`XP_057799749.1`
4	Centromere	着丝粒	0.00000	`XP_057799749.1`
5	Chromatin	染色质	0.00000	`XP_057799749.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64035315`	`A`	`AC`	1bp_insertion	frameshift_variant	20	A16,A24,B1,B102,B107,B108,B123,B18,B24,B29,B3,B45,B55,B6,B86,C19,C43,C49,C64,C83
`Chr3:64035322`	`TTC`	`T`	2bp_deletion	frameshift_variant	18	A16,A24,B102,B107,B108,B123,B18,B24,B29,B3,B45,B55,B6,B86,C19,C43,C64,C83
`Chr3:64035349`	`AC`	`A`	1bp_deletion	frameshift_variant	29	A22,A3,A6,B109,B115,B126,B128,B129,B134,B137,B22,B24,B4,B50,B51,B59,B66,B84,B88,C17,C18,C54,C55,C56,C58,C73,D1,D6,D9
`Chr3:64035391`	`G`	`GC`	1bp_insertion	frameshift_variant	35	A16,A24,B1,B102,B105,B107,B108,B14,B16,B18,B23,B24,B29,B3,B31,B45,B47,B55,B6,B62,B65,B72,B99,C19,C23,C42,C43,C55,C59,C64,C66,C67,C72,C75,C83
`Chr3:64035392`	`CCA`	`*`	2bp_deletion	CDS_variant	2	B126,B44
`Chr3:64035409`	`A`	`AC`	1bp_insertion	frameshift_variant	35	A14,A18,B103,B11,B112,B113,B120,B122,B132,B134,B136,B139,B32,B38,B39,B4,B5,B51,B53,B60,B63,B77,C33,C38,C4,C58,C61,C65,C71,C77,C79,C85,D2,D5,D6
`Chr3:64035429`	`AG`	`A`	1bp_deletion	frameshift_variant	20	A10,B119,B12,B135,B17,B33,B70,B8,C10,C14,C22,C26,C29,C30,C44,C48,C53,C56,C65,D9
`Chr3:64035439`	`ATT`	`A`	2bp_deletion	frameshift_variant	59	A10,A24,A7,A8,B1,B100,B102,B105,B108,B118,B124,B126,B130,B137,B140,B19,B21,B28,B30,B36,B40,B49,B56,B6,B66,B78,B84,B90,B92,B93,B96,B98,C12,C16,C22,C28,C32,C33,C35,C36,C37,C40,C42,C48,C51,C52,C6,C63,C64,C66,C67,C68,C73,C75,C77,C8,D10,D4,D7
`Chr3:64035442`	`A`	`AAT`	2bp_insertion	frameshift_variant	27	A13,A2,A3,A8,A9,B109,B15,B36,B37,B44,B49,B5,B59,B66,B71,B79,B91,B97,B99,C2,C25,C44,C7,C81,C9,D1,D11
`Chr3:64035452`	`CGA`	`C`	2bp_deletion	frameshift_variant	27	A11,A16,A24,B102,B105,B108,B131,B14,B18,B19,B25,B31,B42,B43,B45,C19,C40,C42,C55,C59,C64,C66,C67,C72,C75,C83,D7
`Chr3:64035456`	`CAA`	`C`	2bp_deletion	frameshift_variant	2	D10,D11
`Chr3:64035456`	`CAA`	`C`	2bp_deletion	CDS_variant	2	D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799749.1

440 aa

220

440

Ank_2

Ank

Ank_4

Ank

Ank_2

Ank

PGG

PF12796 Ank_2 8-95 aa PF00023 Ank 41-60 aa PF13637 Ank_4 44-94 aa PF00023 Ank 76-94 aa PF12796 Ank_2 107-166 aa PF00023 Ank 111-130 aa PF00023 Ank 182-214 aa PF13962 PGG 265-378 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799749.1`	Pfam	`PF12796`	Ank_2	Repeat	8	95	8.6e-28	97.5	Ankyrin repeats (3 copies)
`XP_057799749.1`	Pfam	`PF00023`	Ank	Repeat	41	60	2e-24	85.0	Ankyrin repeat
`XP_057799749.1`	Pfam	`PF13637`	Ank_4	Repeat	44	94	4.9e-20	71.9	Ankyrin repeats (many copies)
`XP_057799749.1`	Pfam	`PF00023`	Ank	Repeat	76	94	2e-24	85.0	Ankyrin repeat
`XP_057799749.1`	Pfam	`PF12796`	Ank_2	Repeat	107	166	8.6e-28	97.5	Ankyrin repeats (3 copies)
`XP_057799749.1`	Pfam	`PF00023`	Ank	Repeat	111	130	2e-24	85.0	Ankyrin repeat
`XP_057799749.1`	Pfam	`PF00023`	Ank	Repeat	182	214	2e-24	85.0	Ankyrin repeat
`XP_057799749.1`	Pfam	`PF13962`	PGG	Domain	265	378	6e-24	84.8	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943766.1
ATCCACCATTTCTAGGAAACTAAACTTCTATATGCATCTATAAATTGTGAAGTGCATCGATCCATCCATACACACAACAAAGAAGAAAAAGTAAACAAAGGGAGATATGGAGGTGTTGCAAGCTAAGCTATTCGAAGCTGCGACACAAAATTCCATTACTTCACTGCACCACCTACTCATAGATGATCCATTGATTCTCGACAGAGCTCTCGTTAACTGTTTCAACGAGACTCCTCTGCACGTCGCGGCCATGTTAGGCC...

CDS

1 records

下载 CDS FASTA

LOC131015386
ATGGAGGTGTTGCAAGCTAAGCTATTCGAAGCTGCGACACAAAATTCCATTACTTCACTGCACCACCTACTCATAGATGATCCATTGATTCTCGACAGAGCTCTCGTTAACTGTTTCAACGAGACTCCTCTGCACGTCGCGGCCATGTTAGGCCACGACGATTTCGTGCAGGAAATCGTGGGGTTAAAACCAGAGCTCGTAAACGAGCTGAGTTCGCAACTATCATCTCCTCTGCATCTGGCAGCGGCTAAGGGCCATCT...

Protein

1 records

下载 Protein FASTA

XP_057799749.1
MEVLQAKLFEAATQNSITSLHHLLIDDPLILDRALVNCFNETPLHVAAMLGHDDFVQEIVGLKPELVNELSSQLSSPLHLAAAKGHLGVVKALLRVDSQACLGRDRNDLLPLHLAAAKGRVEAVKLLLEARPDTVRLPACGGESILHLCVKSYQLEALRLILKSVISVMSNIDEFINSTDSDGNTVLHLAVADKQVETIKFLLSVGALEVNAQNHEGLTALEVLIRSRRDVRDSQIEKLLKNEQPLQKNQKSNSWESLME...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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