当前解析结果
SmilChr03G004624| 统一新 Gene ID | SmilChr03G004624 |
|---|---|
| 名称 | SmilChr03G004624 |
| 描述 | IQ domain-containing protein IQM1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63910298 - 63913381 / - |
| NCBI Gene ID | LOC131015396 |
|---|---|
| GeneID | 131015396 |
| locus_tag | - |
| NCBI Name | LOC131015396 |
| 原始查询 | LOC131015396 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | IQ domain-containing protein IQM1-like |
| 产物 | IQ domain-containing protein IQM1-like |
| Arabidopsis | AT4G33050 (EDA39)calmodulin-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:829442] identity=64; qcov=0.973; evalue=3.2e-180; confidence=high |
| Rice | Os01g0570800 (B1114B07.32-1)- identity=56; qcov=1.01; evalue=1.07e-162; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF30383 (IQM_M) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015396 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057799759.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057799759.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057799759.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799759.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799759.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63910508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B49,B79 |
Chr3:63910513 |
CAA |
C |
2bp_deletion | frameshift_variant | 1 | C84 |
Chr3:63910513 |
CAA |
C |
2bp_deletion | CDS_variant | 1 | C84 |
Chr3:63910518 |
G |
GAT |
2bp_insertion | frameshift_variant | 1 | C84 |
Chr3:63910518 |
G |
GAT |
2bp_insertion | CDS_variant | 1 | C84 |
Chr3:63910560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,C14,C55 |
Chr3:63910575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B121,B35,B55,C84 |
Chr3:63910619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr3:63910704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr3:63911022 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C20 |
Chr3:63911022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr3:63911544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799759.1PF30383
IQM_M 182-273 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799759.1 |
Pfam | PF30383 |
IQM_M | Domain | 182 | 273 | 3.4e-42 | 143.2 | IQ motif-containing protein middle domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。