Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004634`

染色体: Chr03 坐标: 63967629-63969273 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004634`
名称	SmilChr03G004634
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63967629 - 63969273 / `-`

ID 对照

NCBI Gene ID	`LOC131015407`
GeneID	`131015407`
locus_tag	`-`
NCBI Name	`LOC131015407`
原始查询	`LOC131015407`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=28.4; qcov=0.947; evalue=2.21e-20; confidence=low
Rice	`Os09g0372900` (OsFbox482) - identity=24.8; qcov=0.748; evalue=2.36e-21; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF23635 (Beta-prop_AT5G49610-like)
InterPro	-
eggNOG	-
NR	GeneID:131015407

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057799772.1`
2	Nucleus	细胞核	0.60000	`XP_057799772.1`
3	Cytosol	细胞质基质	0.20000	`XP_057799772.1`
4	Chromosome	染色体	0.00000	`XP_057799772.1`
5	Centromere	着丝粒	0.00000	`XP_057799772.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63968301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr3:63968398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr3:63968624`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr3:63968626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,C15,C22,C82
`Chr3:63968646`	`T`	`TCG`	2bp_insertion	frameshift_variant	5	B112,C15,C22,C49,C82
`Chr3:63968646`	`T`	`TCG`	2bp_insertion	CDS_variant	5	B112,C15,C22,C49,C82
`Chr3:63968651`	`C`	`CG`	1bp_insertion	frameshift_variant	5	B112,C15,C22,C49,C82
`Chr3:63968651`	`C`	`CG`	1bp_insertion	CDS_variant	5	B112,C15,C22,C49,C82
`Chr3:63968676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B7,C22,C49
`Chr3:63968713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,B49
`Chr3:63968719`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr3:63968726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799772.1

361 aa

180

361

F-box-like

F-box

FBA_3

Beta-prop_KIB1-4

FBA_1

Beta-prop_AT5G49610-like

PF12937 F-box-like 17-51 aa PF00646 F-box 17-54 aa PF08268 FBA_3 80-312 aa PF03478 Beta-prop_KIB1-4 107-260 aa PF07734 FBA_1 112-358 aa PF23635 Beta-prop_AT5G49610-like 158-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799772.1`	Pfam	`PF12937`	F-box-like	Domain	17	51	6.1e-09	36.2	F-box-like
`XP_057799772.1`	Pfam	`PF00646`	F-box	Domain	17	54	2.2e-10	40.7	F-box domain
`XP_057799772.1`	Pfam	`PF08268`	FBA_3	Repeat	80	312	4.2e-23	82.5	F-box associated beta propeller domain
`XP_057799772.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	107	260	5.7e-08	33.3	KIB1-4 beta-propeller
`XP_057799772.1`	Pfam	`PF07734`	FBA_1	Repeat	112	358	1.7e-25	90.4	F-box associated beta propeller domain
`XP_057799772.1`	Pfam	`PF23635`	Beta-prop_AT5G49610-like	Repeat	158	288	1.2e-09	38.5	F-box protein AT5G49610-like, beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943789.1
TCGTGGGTTTTACAAATAAACTCATAAACCACTGCAAGCCGCTCTCTCTTAAATCCGACCACCACTCTCTCTCACTCTCCCTCTCACCACCACTCTCTCGGTCCTCTTTCTCGAAATGGCGAAATCTCAGGGAAGAAGTGTCTCCCTCAACACTGAAATCGTGCTACCAAACGACATTATCATCGTGATTCTCAGCTGGCTCCCAGTAAAATCCCTCTTGAAATTCAAATGCGTCTGCAGATCATGGCGAGCCCTAATTT...

CDS

1 records

下载 CDS FASTA

LOC131015407
ATGGCGAAATCTCAGGGAAGAAGTGTCTCCCTCAACACTGAAATCGTGCTACCAAACGACATTATCATCGTGATTCTCAGCTGGCTCCCAGTAAAATCCCTCTTGAAATTCAAATGCGTCTGCAGATCATGGCGAGCCCTAATTTCCAGCCGACGCTTCATCAAGGCCCACCTCGATAACTCAAAATTAGCCCCATATATAGCCCGCGTCGCTACTCACTGTTCGCGTAAATTAGGTAAACTTAAGCTGTGTTCGGTTAA...

Protein

1 records

下载 Protein FASTA

XP_057799772.1
MAKSQGRSVSLNTEIVLPNDIIIVILSWLPVKSLLKFKCVCRSWRALISSRRFIKAHLDNSKLAPYIARVATHCSRKLGKLKLCSVNSMLYESVSQVFDLSYPLESYCVLEAACDGLLLLCSNKEMILWNPSTRTWKTLPHFDLVSSFTEYDLGYDKSSDDYKVVGFYDVEQSDVIVAVYSLRNDEWKRIKNISSMAMPEAVLANGKLYYFTQPVFTSDLDILSLDLEKEEIEILQMPSYVKVNDRSSLAASEGSLFLLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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