Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004654`

染色体: Chr03 坐标: 64056658-64059498 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004654`
名称	SmilChr03G004654
描述	uncharacterized SmilChr03G004654
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64056658 - 64059498 / `+`

ID 对照

NCBI Gene ID	`LOC131015415`
GeneID	`131015415`
locus_tag	`-`
NCBI Name	`LOC131015415`
原始查询	`LOC131015415`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:819045]; symbol=AT2G44380; hit=AT2G44380; species=arabidopsis; confidence=low
产物	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:819045]; symbol=AT2G44380; hit=AT2G44380; species=arabidopsis; confidence=low
Arabidopsis	`AT2G44380` (AT2G44380) Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:819045] identity=31.2; qcov=0.477; evalue=8.48e-13; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	PF03107 (C1_2)
InterPro	-
eggNOG	-
NR	GeneID:131015415

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057799782.1`
2	Cytoplasm	细胞质	0.60000	`XP_057799782.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057799782.1`
4	Chromosome	染色体	0.00000	`XP_057799782.1`
5	Centromere	着丝粒	0.00000	`XP_057799782.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64056720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:64056735`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B71
`Chr3:64056735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr3:64056739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:64056824`	`A`	`AG`	1bp_insertion	frameshift_variant	21	A22,A25,A3,A6,B109,B115,B126,B25,B4,B50,B59,B84,C18,C54,C55,C56,C58,C81,D1,D6,D9
`Chr3:64056857`	`G`	`A`	EMS_canonical_SNV	stop_gained	21	A15,B103,B13,B19,B2,B47,B52,B57,B60,B81,B82,B9,B99,C1,C11,C27,C29,C30,C69,C86,C87
`Chr3:64056860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B132,B89
`Chr3:64056863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr3:64056880`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A9
`Chr3:64056880`	`TC`	`T`	1bp_deletion	CDS_variant	1	A9
`Chr3:64056885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,C15,C63
`Chr3:64056896`	`A`	`AGG`	2bp_insertion	frameshift_variant	35	A25,A6,A7,B102,B104,B109,B114,B122,B124,B125,B131,B16,B2,B36,B37,B38,B40,B41,B55,B6,B83,B85,B90,C15,C43,C46,C55,C58,C6,C62,C63,C8,C80,D1,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799782.1

324 aa

162

324

C1_2

PF03107 C1_2 57-104 aa PF03107 C1_2 199-244 aa

XP_057799783.1

323 aa

162

323

C1_2

PF03107 C1_2 57-104 aa PF03107 C1_2 199-244 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799782.1`	Pfam	`PF03107`	C1_2	Domain	57	104	3e-16	60.2	C1 domain
`XP_057799782.1`	Pfam	`PF03107`	C1_2	Domain	199	244	3e-16	60.2	C1 domain
`XP_057799783.1`	Pfam	`PF03107`	C1_2	Domain	57	104	3e-16	60.2	C1 domain
`XP_057799783.1`	Pfam	`PF03107`	C1_2	Domain	199	244	3e-16	60.2	C1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943799.1
CTGAGATGAGAAGTTTTGTATGATTCCATTCTATGCCATTTAACAAAGTCCAAAGCTCCATCGACATCCACCACCCACAGACACAATCAGTTGTAGTTGAGAAGGAAAAAAATCACACACACACATATACAATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGAAGAGGAGGAGGAGACAAAGGTTGTTCATCATTGGAGCCACGAGCATCGACTTACTCTCGGGGAACCTCGTACAAGACTAGGATGTTTTGGCTGT...

XM_057943800.1
CTGAGATGAGAAGTTTTGTATGATTCCATTCTATGCCATTTAACAAAGTCCAAAGCTCCATCGACATCCACCACCCACAGACACAATCAGTTGTAGTTGAGAAGGAAAAAAATCACACACACACATATACAATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGAAGAGGAGGAGGAGACAAAGGTTGTTCATCATTGGAGCCACGAGCATCGACTTACTCTCGGGGAACCTCGTACAAGACTAGGATGTTTTGGCTGT...

CDS

2 records

下载 CDS FASTA

LOC131015415
ATGCCATTTAACAAAGTCCAAAGCTCCATCGACATCCACCACCCACAGACACAATCAGTTGTAGTTGAGAAGGAAAAAAATCACACACACACATATACAATGAGTGGGAAAGAAAATAAGATAGAGGAAGAGGAAGAGGAGGAGGAGACAAAGGTTGTTCATCATTGGAGCCACGAGCATCGACTTACTCTCGGGGAACCTCGTACAAGACTAGGATGTTTTGGCTGTGGAAGGCGTTTTAATGAAGGAGTGAAAGCTTA...

Protein

2 records

下载 Protein FASTA

XP_057799782.1
MPFNKVQSSIDIHHPQTQSVVVEKEKNHTHTYTMSGKENKIEEEEEEEETKVVHHWSHEHRLTLGEPRTRLGCFGCGRRFNEGVKAYECSQKCGNKIVLDEECAGLPRKNRHTMHPHHILIQHVFNLDDCFDETLIGKLCAICERFLINTVGCIFYKCTRAECELWMHMRCAQGSDMMYDAADDDDDDDEQCRTANHLSHPKHGLKLVRRNCSFKCDACGTTRRGKSYMCCEANCQYWIHESCASLPQTIETEYHSHSLS...

XP_057799783.1
MPFNKVQSSIDIHHPQTQSVVVEKEKNHTHTYTMSGKENKIEEEEEEEETKVVHHWSHEHRLTLGEPRTRLGCFGCGRRFNEGVKAYECSQKCGNKIVLDEECAGLPRKNRHTMHPHHILIQHVFNLDDCFDETLIGKLCAICERFLINTVGCIFYKCTRAECELWMHMRCAQGSDMMYDAADDDDDDDEQCRTANHLSHPKHGLKLVRRNCSFKCDACGTTRRGKSYMCCEANCQYWIHESCASLPQTIETEYHSHSLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器