Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004611`

染色体: Chr03 坐标: 63836493-63838838 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004611`
名称	SmilChr03G004611
描述	putative uncharacterized protein YDL057W
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63836493 - 63838838 / `-`

ID 对照

NCBI Gene ID	`LOC131015419`
GeneID	`131015419`
locus_tag	`-`
NCBI Name	`LOC131015419`
原始查询	`LOC131015419`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative uncharacterized protein YDL057W
产物	putative uncharacterized protein YDL057W
Arabidopsis	`AT5G11910` (AT5G11910) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831064] identity=62.3; qcov=0.905; evalue=1e-123; confidence=high
Rice	`Os05g0539500` (OsPOP10) - identity=54.8; qcov=0.885; evalue=2.73e-103; confidence=high
GO	-
KEGG	-
Pfam	PF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131015419

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057799787.1`
2	Cytosol	细胞质基质	1.00000	`XP_057799787.1`
3	Nucleus	细胞核	0.00000	`XP_057799787.1`
4	Chromosome	染色体	0.00000	`XP_057799787.1`
5	Centromere	着丝粒	0.00000	`XP_057799787.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63836591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B98,C33,D4
`Chr3:63836601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B30,C28,C5
`Chr3:63836605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B133,B15,C7
`Chr3:63836607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B60,C34,C54,C9
`Chr3:63836626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr3:63836633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr3:63836654`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr3:63836678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B77,B98,C33,D4
`Chr3:63836682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B60,C34,C54
`Chr3:63836727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B98,C33,D4
`Chr3:63836729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B82,C48,C49,C76
`Chr3:63836753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799787.1

306 aa

153

306

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Peptidase_S9

PF12146 Hydrolase_4 68-223 aa PF00561 Abhydrolase_1 69-196 aa PF12697 Abhydrolase_6 70-272 aa PF00326 Peptidase_S9 120-280 aa

XP_057799789.1

305 aa

152

305

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Peptidase_S9

PF12146 Hydrolase_4 67-222 aa PF00561 Abhydrolase_1 68-195 aa PF12697 Abhydrolase_6 69-271 aa PF00326 Peptidase_S9 119-279 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799787.1`	Pfam	`PF12146`	Hydrolase_4	Domain	68	223	5.2e-18	65.9	Serine aminopeptidase, S33
`XP_057799787.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	69	196	1.3e-11	45.4	alpha/beta hydrolase fold
`XP_057799787.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	70	272	1.5e-07	33.0	Alpha/beta hydrolase family
`XP_057799787.1`	Pfam	`PF00326`	Peptidase_S9	Domain	120	280	1.8e-06	28.4	Prolyl oligopeptidase family
`XP_057799789.1`	Pfam	`PF12146`	Hydrolase_4	Domain	67	222	5.2e-18	66.0	Serine aminopeptidase, S33
`XP_057799789.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	68	195	1.2e-11	45.4	alpha/beta hydrolase fold
`XP_057799789.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	69	271	1.4e-07	33.1	Alpha/beta hydrolase family
`XP_057799789.1`	Pfam	`PF00326`	Peptidase_S9	Domain	119	279	1.8e-06	28.4	Prolyl oligopeptidase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943806.1
ATCAGAAGTGTTTTTCCATGAACATATCAGCTACTTCATGAAGAGTTAATTTCATAATAAATGCTGTCTAAAAAGAAGAAGAAAAATCCTACTTCATTCATTAATTTCCCTTGACAAATGACGATAATTAATTGCGACGAGAAGCGTGGTGGCGCAAAACGCGATAACAGAAATTCATCTCCTGATTCCGAATCTCCGATGCCGGAAAGCCAACAGAATCAACACCCCAAATCTCCAGTGGAGAGCAAGAAAGTGTTTAT...

XM_057943804.1
ATCAGAAGTGTTTTTCCATGAACATATCAGCTACTTCATGAAGAGTTAATTTCATAATAAATGCTGTCTAAAAAGAAGAAGAAAAATCCTACTTCATTCATTAATTTCCCTTGACAAATGACGATAATTAATTGCGACGAGAAGCGTGGTGGCGCAAAACGCGATAACAGAAATTCATCTCCTGATTCCGAATCTCCGATGCCGGAAAGCCAACAGAATCAACACCCCAAATCTCCAGTAGTGGAGAGCAAGAAAGTGTT...

CDS

2 records

下载 CDS FASTA

LOC131015419
ATGACGATAATTAATTGCGACGAGAAGCGTGGTGGCGCAAAACGCGATAACAGAAATTCATCTCCTGATTCCGAATCTCCGATGCCGGAAAGCCAACAGAATCAACACCCCAAATCTCCAGTGGAGAGCAAGAAAGTGTTTATAGAGAACAGCTATGGCGAGAAGCTAGTCGGGATACTGCACGAAACGGGGTCGAGTGAGCTCGTAGTTATATGCCATGGATTCCGGTCCACAAAGGATCGCATTCCCATGGCGAACCT...

LOC131015419
ATGACGATAATTAATTGCGACGAGAAGCGTGGTGGCGCAAAACGCGATAACAGAAATTCATCTCCTGATTCCGAATCTCCGATGCCGGAAAGCCAACAGAATCAACACCCCAAATCTCCAGTAGTGGAGAGCAAGAAAGTGTTTATAGAGAACAGCTATGGCGAGAAGCTAGTCGGGATACTGCACGAAACGGGGTCGAGTGAGCTCGTAGTTATATGCCATGGATTCCGGTCCACAAAGGATCGCATTCCCATGGCGAA...

Protein

2 records

下载 Protein FASTA

XP_057799787.1
MTIINCDEKRGGAKRDNRNSSPDSESPMPESQQNQHPKSPVVESKKVFIENSYGEKLVGILHETGSSELVVICHGFRSTKDRIPMANLALAFEREGISAFRFDFAGNGESEGSFQYGNYRREAEDLRAVVEHFKANQRCIVAVVGHSKGGNVVLLYASKYNDVQTVVNIAGRFDLRRGIEGRLGKDFQEKIKQYGFIDVRNRRGKTEYRVTEASLKDRLETDPRAACRSIPPNCSVLTVHGTLDEMVPVDDATEFDKNIR...

XP_057799789.1
MTIINCDEKRGGAKRDNRNSSPDSESPMPESQQNQHPKSPVESKKVFIENSYGEKLVGILHETGSSELVVICHGFRSTKDRIPMANLALAFEREGISAFRFDFAGNGESEGSFQYGNYRREAEDLRAVVEHFKANQRCIVAVVGHSKGGNVVLLYASKYNDVQTVVNIAGRFDLRRGIEGRLGKDFQEKIKQYGFIDVRNRRGKTEYRVTEASLKDRLETDPRAACRSIPPNCSVLTVHGTLDEMVPVDDATEFDKNIRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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