Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004575`

染色体: Chr03 坐标: 63654139-63657796 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004575`
名称	SmilChr03G004575
描述	uncharacterized SmilChr03G004575
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63654139 - 63657796 / `+`

ID 对照

NCBI Gene ID	`LOC131015430`
GeneID	`131015430`
locus_tag	`-`
NCBI Name	`LOC131015430`
原始查询	`LOC131015430`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphorylated adapter RNA export-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821588]; symbol=AT3G20430; hit=AT3G20430; species=arabidopsis; confidence=high
产物	phosphorylated adapter RNA export-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821588]; symbol=AT3G20430; hit=AT3G20430; species=arabidopsis; confidence=high
Arabidopsis	`AT3G20430` (AT3G20430) phosphorylated adapter RNA export-like protein [Source:NCBI gene (formerly Entrezgene);Acc:821588] identity=45; qcov=1; evalue=1.98e-60; confidence=high
Rice	`Os01g0559200` - identity=41.6; qcov=1.01; evalue=1.32e-53; confidence=medium
GO	GO:0006408 (snRNA export from nucleus)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF10258 (PHAX_RNA-bd)
InterPro	-
eggNOG	-
NR	GeneID:131015430

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799812.1`
2	Nucleoplasm	核质	1.00000	`XP_057799812.1`
3	Nuclear body	核内小体	0.20000	`XP_057799812.1`
4	Chromosome	染色体	0.00000	`XP_057799812.1`
5	Centromere	着丝粒	0.00000	`XP_057799812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63657363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,B136
`Chr3:63657375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr3:63657377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,B136
`Chr3:63657393`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B19
`Chr3:63657393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr3:63657458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:63657471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A1,B136,B28
`Chr3:63657472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,A21,B108,B77
`Chr3:63657485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B27,B53
`Chr3:63657560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B1,B56,B96
`Chr3:63657594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B86
`Chr3:63657607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799812.1

271 aa

136

271

PHAX_RNA-bd

PF10258 PHAX_RNA-bd 90-168 aa

XP_057799813.1

271 aa

136

271

PHAX_RNA-bd

PF10258 PHAX_RNA-bd 90-168 aa

XP_057799814.1

271 aa

136

271

PHAX_RNA-bd

PF10258 PHAX_RNA-bd 90-168 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799812.1`	Pfam	`PF10258`	PHAX_RNA-bd	Domain	90	168	2.1e-22	79.6	Phosphorylated adapter RNA export protein, RNA-binding domain
`XP_057799813.1`	Pfam	`PF10258`	PHAX_RNA-bd	Domain	90	168	2.1e-22	79.6	Phosphorylated adapter RNA export protein, RNA-binding domain
`XP_057799814.1`	Pfam	`PF10258`	PHAX_RNA-bd	Domain	90	168	2.1e-22	79.6	Phosphorylated adapter RNA export protein, RNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943830.1
AAATAAATATTTTCCTTTCCGTATTTGCCGCAGATTTTTCGTTTGAAGCTCTCTGCTACTGCTAAGTCGCGCGCTGCAGCAGTTTCCGTAATCGAAGGGCAGTAATTACATGGAAGGACAAGAAAGCTTGCTCGATACACTTTTTGACGAGGAAAATCTTGAGGATGGCCAAGATGTTGAGATGCTTGATGTAGAAGAGGGTGAGTTCGTTGAACTGAATCCAAGGACTAGAGCAGGAGAAAGTTCTAATGATCATGATA...

XM_057943831.1
AAATATTTTCCTTTCCGTATTTGCCGCAGATTTTTCGTTTGAAGCTCTCTGCTACTGCTAAGTCGCGCGCTGCAGCAGTTTCCGTAATCGAAGTGTGTATAGGCTTTTTAATGGCAACCAATAGTTCATCGAGGTCTCTTACATCACCACCACCTTCATCTTCAAATTCCGATAGTGGACGTAAATCTTTGTGGAGTTATGTCAAAATATCTACATAAGCTTGATTTATTCCCAGCTAGTTGGGTCCTATAAGATATTAT...

CDS

3 records

下载 CDS FASTA

LOC131015430
ATGGAAGGACAAGAAAGCTTGCTCGATACACTTTTTGACGAGGAAAATCTTGAGGATGGCCAAGATGTTGAGATGCTTGATGTAGAAGAGGGTGAGTTCGTTGAACTGAATCCAAGGACTAGAGCAGGAGAAAGTTCTAATGATCATGATATTCAAGAAAATAAAGAATCTAACAAGCCGAGTTCAAAACAAAAGAAGAGGAAAAAGAAAAACAAGCGAAAGAGAGGTGGCAATGTAGGCCCAAATGTAACTGATATCAA...

Protein

3 records

下载 Protein FASTA

XP_057799812.1
MEGQESLLDTLFDEENLEDGQDVEMLDVEEGEFVELNPRTRAGESSNDHDIQENKESNKPSSKQKKRKKKNKRKRGGNVGPNVTDINRFVLDACKRLRETKSYLMYTAVGCLGVAALSDLIKEVDAIQACGGQKTSDGSRFRKGGGILWNIIKARDPNAYKEIMRQGREFEKQFKQQKQEPAAQHAETPPANAPLDASQNKKGNPSGNLELGPHDQSQRDAVQTRASVHERIRMPVIYDDCLFGGEDPKDKLADDRAAPA...

XP_057799813.1
MEGQESLLDTLFDEENLEDGQDVEMLDVEEGEFVELNPRTRAGESSNDHDIQENKESNKPSSKQKKRKKKNKRKRGGNVGPNVTDINRFVLDACKRLRETKSYLMYTAVGCLGVAALSDLIKEVDAIQACGGQKTSDGSRFRKGGGILWNIIKARDPNAYKEIMRQGREFEKQFKQQKQEPAAQHAETPPANAPLDASQNKKGNPSGNLELGPHDQSQRDAVQTRASVHERIRMPVIYDDCLFGGEDPKDKLADDRAAPA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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