Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004578`

染色体: Chr03 坐标: 63664236-63666946 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004578`
名称	SmilChr03G004578
描述	uncharacterized SmilChr03G004578
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63664236 - 63666946 / `-`

ID 对照

NCBI Gene ID	`LOC131015431`
GeneID	`131015431`
locus_tag	`-`
NCBI Name	`LOC131015431`
原始查询	`LOC131015431`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述	BRISC/BRCA1-A complex protein [Source:NCBI gene (formerly Entrezgene);Acc:829433]; symbol=AT4G32960; hit=AT4G32960; species=arabidopsis; confidence=high
产物	BRISC/BRCA1-A complex protein [Source:NCBI gene (formerly Entrezgene);Acc:829433]; symbol=AT4G32960; hit=AT4G32960; species=arabidopsis; confidence=high
Arabidopsis	`AT4G32960` (AT4G32960) BRISC/BRCA1-A complex protein [Source:NCBI gene (formerly Entrezgene);Acc:829433] identity=64.8; qcov=0.866; evalue=9e-114; confidence=high
Rice	`Os06g0150100` - identity=46.8; qcov=1.04; evalue=1.6e-90; confidence=high
GO	GO:0045739 (positive regulation of DNA repair); GO:0070531 (BRCA1-A complex); GO:0070552 (BRISC complex)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131015431

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057799816.1`
2	Cytosol	细胞质基质	1.00000	`XP_057799816.1`
3	Nucleus	细胞核	0.60000	`XP_057799816.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057799816.1`
5	Vesicle	囊泡	0.20000	`XP_057799816.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63664457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:63664589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C14,C62,D11
`Chr3:63664602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C48
`Chr3:63664622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr3:63664639`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B123
`Chr3:63664639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:63664658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C25,C26,C7,C9
`Chr3:63664667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,B80,C18
`Chr3:63664673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A21,B56,B93,B96
`Chr3:63664730`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B28
`Chr3:63664730`	`CA`	`C`	1bp_deletion	CDS_variant	1	B28
`Chr3:63664731`	`A`	`AT`	1bp_insertion	frameshift_variant	3	B11,B111,B82

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943833.1
AAAATATCAAACCCAGAAATCAACCAGAAACCCCAGCGAAAAAAATGGACGTCGCAGAGGTAAGAAGCTCGAACCCACAGCTAGCAGGGCACGGCGGCGGCGGAGGCGGCGGTGGATACACTCTTCCGGCAGTCAGATTCTCAAACGAGGACATACTATTCTGCATTGATGTCGGCCCGGAAACAATGACGGAGATGAAGGTGAACGGGCCCAACGGCCGTCCCTACACCCGATTGGATTCCATAAAGCAGGCAGTTATG...

CDS

1 records

下载 CDS FASTA

LOC131015431
ATGGACGTCGCAGAGGTAAGAAGCTCGAACCCACAGCTAGCAGGGCACGGCGGCGGCGGAGGCGGCGGTGGATACACTCTTCCGGCAGTCAGATTCTCAAACGAGGACATACTATTCTGCATTGATGTCGGCCCGGAAACAATGACGGAGATGAAGGTGAACGGGCCCAACGGCCGTCCCTACACCCGATTGGATTCCATAAAGCAGGCAGTTATGCTATTCGTGCACTCCAAGCTCAGCATAAATCCCGATCACCGCTT...

Protein

1 records

下载 Protein FASTA

XP_057799816.1
MDVAEVRSSNPQLAGHGGGGGGGGYTLPAVRFSNEDILFCIDVGPETMTEMKVNGPNGRPYTRLDSIKQAVMLFVHSKLSINPDHRFAFSALAKSTYWLRKEFSSEVDAALSALRGLSVDSSASHADLTQLFKVATHEAKKSRAQNRIFRVILIYCRSSMPPQFQLPSTLKLFTLDVMYLHDKPGPDNCPQVVYDTLVEALERISEFEGYIFESGQGLTRALFRNMCQLLCHPQQRCIQDELDLPKSLVKKSLAADVSQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

跳转到基因组浏览器