当前解析结果
SmilChr03G004590| 统一新 Gene ID | SmilChr03G004590 |
|---|---|
| 名称 | SmilChr03G004590 |
| 描述 | calcineurin B-like protein 10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63738483 - 63741036 / + |
| NCBI Gene ID | LOC131015432 |
|---|---|
| GeneID | 131015432 |
| locus_tag | - |
| NCBI Name | LOC131015432 |
| 原始查询 | LOC131015432 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcineurin B-like protein 10 |
| 产物 | calcineurin B-like protein 10 |
| Arabidopsis | AT4G33000 (CBL10)calcineurin B-like protein 10 [Source:NCBI gene (formerly Entrezgene);Acc:829437] identity=71.1; qcov=0.969; evalue=3.46e-125; confidence=high |
| Rice | Os01g0711500 (OsCBL10)- identity=63.2; qcov=1.02; evalue=2.96e-113; confidence=high |
| GO | GO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding) |
| KEGG | - |
| Pfam | PF13202 (EF-hand_5); PF13499 (EF-hand_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015432 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057799817.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057799818.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057799817.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057799818.1 |
| 5 | Cell membrane | 细胞膜 | 0.20000 | XP_057799818.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63738646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:63738849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr3:63738935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr3:63739143 |
A |
AC |
1bp_insertion | frameshift_variant | 8 | A8,B122,B123,B128,B131,B4,C82,D6 |
Chr3:63739144 |
GTT |
G |
2bp_deletion | frameshift_variant | 8 | A8,B122,B123,B128,B131,B4,C82,D6 |
Chr3:63739148 |
C |
CT |
1bp_insertion | frameshift_variant | 8 | A8,B122,B123,B128,B131,B4,C82,D6 |
Chr3:63739175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:63740049 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | B126,B137,B45,B51,B73,C10,C15,C16,C3,C39,C41,C74,C85,D2 |
Chr3:63740050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr3:63740464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799817.1PF13202
EF-hand_5 128-148 aa
PF13499
EF-hand_7 162-231 aa
PF13202
EF-hand_5 209-233 aa
XP_057799818.1PF13202
EF-hand_5 115-135 aa
PF13499
EF-hand_7 149-218 aa
PF13202
EF-hand_5 196-220 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799817.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 128 | 148 | 1.3e-12 | 47.3 | EF hand |
XP_057799817.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 162 | 231 | 8.6e-16 | 58.8 | EF-hand domain pair |
XP_057799817.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 209 | 233 | 1.3e-12 | 47.3 | EF hand |
XP_057799818.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 115 | 135 | 9.8e-13 | 47.7 | EF hand |
XP_057799818.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 149 | 218 | 6.2e-16 | 59.2 | EF-hand domain pair |
XP_057799818.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 196 | 220 | 9.8e-13 | 47.7 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。