Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004507

染色体: Chr03 坐标: 63167632-63172830 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004507
名称SmilChr03G004507
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向63167632 - 63172830 / -

ID 对照

NCBI Gene IDLOC131015438
GeneID131015438
locus_tag-
NCBI NameLOC131015438
原始查询LOC131015438

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物probable LRR receptor-like serine/threonine-protein kinase At3g47570
ArabidopsisAT3G47570 (AT3G47570)
Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911]
identity=46.8; qcov=0.911; evalue=1.09e-50; confidence=medium
RiceOs04g0213800 (OsRLCK137)
-
identity=50.5; qcov=0.793; evalue=7.76e-61; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131015438

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057799826.1
2 Cytosol 细胞质基质 0.80000 XP_057799826.1
3 Nucleus 细胞核 0.00000 XP_057799826.1
4 Chromosome 染色体 0.00000 XP_057799826.1
5 Centromere 着丝粒 0.00000 XP_057799826.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:63169951 CTA C 2bp_deletion frameshift_variant 4 B28,B56,B96,D10
Chr3:63169951 CTA C 2bp_deletion CDS_variant 4 B28,B56,B96,D10
Chr3:63169964 C T EMS_canonical_SNV CDS_variant 1 B83
Chr3:63169998 G A EMS_canonical_SNV CDS_variant 2 B85,C81
Chr3:63170020 T TAC 2bp_insertion frameshift_variant 3 A18,B98,C22
Chr3:63170020 T TAC 2bp_insertion CDS_variant 3 A18,B98,C22
Chr3:63170022 C T EMS_canonical_SNV CDS_variant 4 A18,B98,C17,C22
Chr3:63170032 GAC * 2bp_deletion CDS_variant 4 B109,B118,B86,C80
Chr3:63170034 C CA 1bp_insertion frameshift_variant 5 B4,B41,C32,C46,C55
Chr3:63170034 C CA 1bp_insertion CDS_variant 5 B4,B41,C32,C46,C55
Chr3:63170036 C T EMS_canonical_SNV CDS_variant 5 B4,B41,C32,C46,C55
Chr3:63170046 A AT 1bp_insertion frameshift_variant 1 A8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057799826.1
237 aa
N
1
118
237
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 26-193 aa PF07714 PK_Tyr_Ser-Thr 28-177 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799826.1 Pfam PF00069 Pkinase Domain 26 193 7.2e-31 108.3 Protein kinase domain
XP_057799826.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 28 177 7.9e-28 98.2 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057943843.1
GGCAAAGTTAGCTAATGAAGTCTTCTTCATTTGGTGGCTTTGATGAGGCATGCAGTGGATAGTTGTGAGGTGGATGACATAAAGAATGGAAAATGTTGTTCTTTATTATTACCATGGAAGAAAGAATCTCTTATTATGAACTGCTGCAAGCAACAGAAAGATTCGATGAAAGCAATTTACTTGGCACTGGGAGTTCTTGCTCTGTTTATAAAGGAATTCTTAACAATGGGAAGGATATCGTTGTCAAGGTGTTTAATATG...

CDS

1 records

下载 CDS FASTA
LOC131015438
ATGTTGTTCTTTATTATTACCATGGAAGAAAGAATCTCTTATTATGAACTGCTGCAAGCAACAGAAAGATTCGATGAAAGCAATTTACTTGGCACTGGGAGTTCTTGCTCTGTTTATAAAGGAATTCTTAACAATGGGAAGGATATCGTTGTCAAGGTGTTTAATATGCAGCTAGAAGGTATTTCAAGAATATTTGATGTCGAATGTGAGATACTACGTAGCATTCGACACAGGAATCTGACAAGCGTCATAAGCAGTTG...

Protein

1 records

下载 Protein FASTA
XP_057799826.1
MLFFIITMEERISYYELLQATERFDESNLLGTGSSCSVYKGILNNGKDIVVKVFNMQLEGISRIFDVECEILRSIRHRNLTSVISSCSNEEFKALVLEYMPKGNLEKWLYSHSYCLNMMERLNIMIDVASALEYLHHGYSMPIVHSDLKPSNVLLDEDMVAHVSDFGIAKLLCDGDSFVLTNTLATFGYIAPGEVSLNILIALHFQSINCVFLTAHIMIFVVPEYGLEGLVSTRCDV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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