Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004517

染色体: Chr03 坐标: 63210883-63215270 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004517
名称SmilChr03G004517
描述uncharacterized SmilChr03G004517
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向63210883 - 63215270 / +

ID 对照

NCBI Gene IDLOC131015448
GeneID131015448
locus_tag-
NCBI NameLOC131015448
原始查询LOC131015448

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os05g0596200; species=rice; confidence=medium
产物hit=Os05g0596200; species=rice; confidence=medium
ArabidopsisAT5G11600 (AT5G11600)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831032]
identity=52.5; qcov=0.971; evalue=1.67e-48; confidence=medium
RiceOs05g0596200
-
identity=70.2; qcov=0.608; evalue=9.8e-49; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131015448

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057799842.1
2 Nucleoplasm 核质 0.60000 XP_057799842.1
3 Chromosome 染色体 0.20000 XP_057799842.1
4 Centromere 着丝粒 0.00000 XP_057799842.1
5 Chromatin 染色质 0.00000 XP_057799842.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:63211406 G A EMS_canonical_SNV CDS_variant 1 B99
Chr3:63211409 T TA 1bp_insertion frameshift_variant 1 C83
Chr3:63211409 T TA 1bp_insertion CDS_variant 1 C83
Chr3:63211446 C T EMS_canonical_SNV CDS_variant 2 B101,B140
Chr3:63211462 CT C 1bp_deletion frameshift_variant 17 A13,B105,B106,B121,B29,B30,B69,B8,B86,C13,C29,C33,C36,C38,C45,C65,C80
Chr3:63211511 C T EMS_canonical_SNV CDS_variant 2 C18,D5
Chr3:63211519 C T EMS_canonical_SNV CDS_variant 2 C42,C62
Chr3:63212518 TTA T 2bp_deletion frameshift_variant 37 A15,A18,B101,B103,B125,B13,B132,B133,B139,B19,B20,B21,B27,B3,B49,B5,B54,B57,B58,B61,B67,B77,B8,B80,B81,B82,B86,B94,C13,C22,C31,C40,C46,C58,C7,C78,C87
Chr3:63212525 TCA T 2bp_deletion frameshift_variant 36 A15,A18,B101,B103,B125,B13,B132,B133,B139,B19,B20,B21,B27,B3,B49,B5,B54,B57,B58,B61,B67,B77,B8,B80,B81,B82,B86,B94,C13,C22,C31,C40,C46,C58,C7,C87
Chr3:63212531 TCC T 2bp_deletion frameshift_variant 38 A15,A18,B101,B103,B125,B13,B132,B133,B139,B19,B20,B21,B27,B3,B49,B5,B54,B57,B58,B61,B67,B77,B8,B80,B81,B82,B86,B94,B98,C13,C22,C31,C40,C46,C58,C7,C87,D4
Chr3:63213364 C T EMS_canonical_SNV CDS_variant 1 B122
Chr3:63213397 A ATC 2bp_insertion frameshift_variant 12 A13,B121,B139,B19,B61,B69,B72,B86,C11,C51,C69,C70

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057943861.1
AAAATACAAGCACAAAAATATTTTTTTTCTAACTTTTTGAAAAATATGAAAAGGAAAAAAAGAAAAAAAGAAAAAATTCAGATCAGTTTTTATAATCAACAGCTCAAAAACTTGCAATCCAAAACATTGATTATCGTTTAATGACAATTTTGGTGATATTTTCATCATTCATTTCTCTCTCTTCATAATATGTTTTGAAATCACTTCTTTAGTCAAGCAATTGCAGCACTGAATTTAAATTTGTTTATTTAATCAGATTT...
XM_057943860.1
AGAAAAAATTCAGATCAGTTTTTATAATCAACAGCTCAAAAACTTGCAATCCAAAACATTGATTATCGTTTAATGACAATTTTGGTGATATTTTCATCATTCATTTCTCTCTCTTCATAATATGTTTTGAAATCACTTCTTTAGTCAAGCAATTGCAGCACTGAATTTAAATTTGTTTATTTAATCAGATTTCAGACACAGTAAATCCAGATTTTCAAGTAAGAAAAAGCAATAAAGAAAATAAGAAATTTGAAAACGGT...

CDS

3 records

下载 CDS FASTA
LOC131015448
ATGGCCACAAATGCTAAATCGAGTAATTTCGCGAAACTGAAGCCCGCTGTTGGAGATGGGCCGTCTTCTTCAAAACCTAGATTTGATCCATCTGCATCGAAGAAGAAATTTATTGTGGGATCAATCAGGAATTCTGCTGCTGATTCCAAAAATAGATCCATTTTCAGCGGTAGCTCCAAAATGACGAAGAAAACATTCACTCAAACGAAAGATGATAAGAAAACCGTGACTAGAACCAGAGAGAAGAAAGTGTATTCTTT...
LOC131015448
ATGGCCACAAATGCTAAATCGAGTAATTTCGCGAAACTGAAGCCCGCTGTTGGAGATGGGCCGTCTTCTTCAAAACCTAGATTTGATCCATCTGCATCGAAGAAGAAATTTATTGTGGGATCAATCAGGAATTCTGCTGCTGATTCCAAAAATAGATCCATTTTCAGCGGTAGCTCCAAAATGACGAAGAAAACATTCACTCAAACGAAAGATGATAAGAAAACCGTGACTAGAACCAGAGAGAAGAAAGTGTATTCTTT...

Protein

3 records

下载 Protein FASTA
XP_057799842.1
MATNAKSSNFAKLKPAVGDGPSSSKPRFDPSASKKKFIVGSIRNSAADSKNRSIFSGSSKMTKKTFTQTKDDKKTVTRTREKKVYSLPGQKFDVPEEREPLRIFYESLSKQIPSSEMAEFWLMEHGMLSPERARRAYEKKQRKQKQLRSGAPIKSPPPSTSSRPESSKKPQPVPKNGEVKAKKRIMEDSEDDDDFVLSHKRRRA
XP_057799843.1
MATNAKSSNFAKLKPAVGDGPSSSKPRFDPSASKKKFIVGSIRNSAADSKNRSIFSGSSKMTKKTFTQTKDDKKTVTRTREKKVYSLPGQKFDVPEEREPLRIFYESLSKQIPSSEMAEFWLMEHGMLSPERARRAYEKKQRKQKQLRSGAPIKSPPPSTSSRPESSKKPQPVPKNGEVKAKKRIMEDSEDDDDFVLSHKRRRA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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