Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004563`

染色体: Chr03 坐标: 63565992-63571058 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004563`
名称	SmilChr03G004563
描述	histidine-containing phosphotransfer protein 4-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63565992 - 63571058 / `-`

ID 对照

NCBI Gene ID	`LOC131015453`
GeneID	`131015453`
locus_tag	`-`
NCBI Name	`LOC131015453`
原始查询	`LOC131015453`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histidine-containing phosphotransfer protein 4-like
产物	histidine-containing phosphotransfer protein 4-like
Arabidopsis	`AT3G16360` (AHP4) HPT phosphotransmitter 4 [Source:NCBI gene (formerly Entrezgene);Acc:820883] identity=59.8; qcov=0.83; evalue=5.4e-54; confidence=high
Rice	`Os01g0743800` (OsPHP1) - identity=54.5; qcov=0.935; evalue=1.31e-50; confidence=medium
GO	GO:0000160 (phosphorelay signal transduction system); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009736 (cytokinin-activated signaling pathway); GO:0009927 (histidine phosphotransfer kinase activity); GO:0016310 (phosphorylation); GO:0043424 (protein histidine kinase binding)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF01627 (Hpt)
InterPro	-
eggNOG	-
NR	GeneID:131015453

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057799852.1`
2	Cytoplasm	细胞质	0.80000	`XP_057799850.1`
3	Nucleus	细胞核	0.40000	`XP_057799852.1`
4	Chromosome	染色体	0.00000	`XP_057799850.1`
5	Centromere	着丝粒	0.00000	`XP_057799850.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63566280`	`A`	`AT`	1bp_insertion	frameshift_variant	10	A14,A2,B131,B61,B64,B97,C43,C87,D1,D4
`Chr3:63566288`	`TC`	`T`	1bp_deletion	frameshift_variant	187	A1,A11,A13,A14,A16,A18,A21,A22,A24,A25,A3,A4,A6,A7,A8,A9,B1,B102,B104,B106,B107,B109,B110,B111,B113,B115,B117,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B130,B131,B132,B133,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B51,B57,B58,B59,B6,B60,B61,B62,B63,B65,B69,B70,B71,B72,B73,B74,B76,B77,B78,B79,B8,B80,B82,B83,B89,B9,B90,B91,B92,B93,B94,B98,C1,C10,C11,C13,C14,C17,C18,C20,C21,C22,C24,C26,C27,C28,C29,C30,C31,C32,C34,C35,C37,C38,C4,C40,C41,C42,C45,C46,C47,C48,C49,C5,C51,C53,C55,C57,C58,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C73,C75,C76,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C9,D10,D5,D6,D7,D9
`Chr3:63566379`	`G`	`GTT`	2bp_insertion	frameshift_variant	1	C78
`Chr3:63566379`	`G`	`GTT`	2bp_insertion	CDS_variant	1	C78
`Chr3:63566845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B73,C46,C55
`Chr3:63566863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr3:63566998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr3:63567026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr3:63567543`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:63567571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B69,C40,C75
`Chr3:63567626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr3:63570180`	`G`	`GAA`	2bp_insertion	frameshift_variant	47	A13,A20,A21,A22,A3,A4,B104,B115,B117,B118,B123,B126,B128,B136,B139,B140,B16,B18,B25,B27,B28,B41,B5,B50,B58,B59,B62,B65,B70,B78,B80,B84,B98,C1,C18,C3,C32,C37,C39,C41,C44,C49,C58,C6,C68,C71,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799850.1

184 aa

184

Hpt

PF01627 Hpt 74-158 aa

XP_057799851.1

184 aa

184

Hpt

PF01627 Hpt 74-158 aa

XP_057799852.1

177 aa

177

Hpt

PF01627 Hpt 74-158 aa

XP_057799853.1

171 aa

171

Hpt

PF01627 Hpt 74-158 aa

XP_057799854.1

160 aa

160

Hpt

PF01627 Hpt 50-134 aa

XP_057799855.1

153 aa

153

Hpt

PF01627 Hpt 50-134 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799850.1`	Pfam	`PF01627`	Hpt	Domain	74	158	8.6e-12	45.9	Hpt domain
`XP_057799851.1`	Pfam	`PF01627`	Hpt	Domain	74	158	8.6e-12	45.9	Hpt domain
`XP_057799852.1`	Pfam	`PF01627`	Hpt	Domain	74	158	7.4e-12	46.1	Hpt domain
`XP_057799853.1`	Pfam	`PF01627`	Hpt	Domain	74	158	6.4e-12	46.3	Hpt domain
`XP_057799854.1`	Pfam	`PF01627`	Hpt	Domain	50	134	8.3e-12	45.9	Hpt domain
`XP_057799855.1`	Pfam	`PF01627`	Hpt	Domain	50	134	7e-12	46.1	Hpt domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057943872.1
TTATTGTAAGTGTCGTCGATCATTCGTATAAACTGCAATTTTTAGATTATTAATGGGAAATTGGGAATATTCTAGCTGAAGGCGCTGGTTTTTGTGCGTAGACGACTATGATCATTGATCGGCGGTTTTGATTTTTGCGGCCGAAGAGGAGGTTTGAGCTAGGAGAAGGAGTTGCTGAAACATGGTTATAGCTTTAAAGAGAAATAATTATCTCTAGAAGTGTCTGGTAAAAAGCTTGAGAGCTCAGTGTAAAGGAATCT...

XM_057943868.1
TTATTGTAAGTGTCGTCGATCATTCGTATAAACTGCAATTTTTAGATTATTAATGGGAAATTGGGAATATTCTAGCTGAAGGCGCTGGTTTTTGTGCGTAGACGACTATGATCATTGATCGGCGGTTTTGATTTTTGCGGCCGAAGAGGAGGTTTGAGCTAGGAGAAGGAGTTGCTGAAACATGGTTATAGCTTTAAAGAGAAATAATTATCTCTAGAAGTGTCTGGTAAAAAGCTTGAGAGCTCAGTGTAAAGGAATCT...

CDS

6 records

下载 CDS FASTA

LOC131015453
ATGATTAACATATTCTCCGTGGGCTTATCGACAACACAGAGGATAGAGTCTCAGGAAAAGAGAATCTATCTGTTTCAGGGATATCTTGATGAACAGTTCCTTCAACTGGAAGATCTGCAGGATGAAGTCAACCCTAACTTTGTTGAAGAAGTGGTCAAGCTATTTTACACTGACTCGGTCCGACTAATTCGAAGCATAGAACTGACACTAGAAAATACCCCTTGGGACTTCGAGAAACTGGATAAGATCATGCATCAGTT...

LOC131015453
ATGGAATATTTATCCTATATAACCGTATGCCACCTTAGCTCTTTTCCTATTGTAAACCAAATATTTCGACACTTCCTTTTGTGCTATCTCTTCTTATTCTATACAATGGAACGCCAAGCTGCCTATATGAGGAATGCTTTATTCGATCAGGGATATCTTGATGAACAGTTCCTTCAACTGGAAGATCTGCAGGATGAAGTCAACCCTAACTTTGTTGAAGAAGTGGTCAAGCTATTTTACACTGACTCGGTCCGACTAAT...

Protein

6 records

下载 Protein FASTA

XP_057799850.1
MEYLSYITVCHLSSFPIVNQIFRHFLLCYLFLFYTMERQAAYMRNALFDQGYLDEQFLQLEDLQDEVNPNFVEEVVKLFYTDSVRLIRSIELTLENTPWDFEKLDKIMHQFKGSSSSIGAKRVKKECTQFQEYCKVGNFDGCMREFQEVKQEHAALKRKLENYFQVFLVVHVGIHLSVYWEKKW

XP_057799851.1
MEYLSYITVCHLSSFPIVNQIFRHFLLCYLFLFYTMERQAAYMRNALFDQGYLDEQFLQLEDLQDEVNPNFVEEVVKLFYTDSVRLIRSIELTLENTPWDFEKLDKIMHQFKGSSSSIGAKRVKKECTQFQEYCKVGNFDGCMREFQEVKQEHAALKRKLENYFQVFLVVHVGIHLSVYWEKKW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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