当前解析结果
SmilChr03G004556| 统一新 Gene ID | SmilChr03G004556 |
|---|---|
| 名称 | SmilChr03G004556 |
| 描述 | calcineurin-binding protein 1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63527341 - 63538360 / - |
| NCBI Gene ID | LOC131015481 |
|---|---|
| GeneID | 131015481 |
| locus_tag | - |
| NCBI Name | LOC131015481 |
| 原始查询 | LOC131015481 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcineurin-binding protein 1 |
| 产物 | calcineurin-binding protein 1 |
| Arabidopsis | AT4G32820 (AT4G32820)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829418] identity=53.4; qcov=0.968; evalue=0; confidence=high |
| Rice | Os03g0685750- identity=43.2; qcov=0.064; evalue=9.57e-25; confidence=weak |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006325 (chromatin organization); GO:0031491 (nucleosome binding) |
| KEGG | - |
| Pfam | PF27595 (HIR3_bundle); PF30992 (CABIN1_C); PF30993 (CABIN1_N); PF30995 (CABIN1_M) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015481 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799888.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057799888.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057799888.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799888.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799888.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63527564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:63527607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:63527656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr3:63527668 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C40 |
Chr3:63527694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr3:63527720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr3:63527757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C40 |
Chr3:63527892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:63528546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr3:63528555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:63528587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B73,B78,B85,C28,C56 |
Chr3:63528783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799888.1PF30993
CABIN1_N 27-198 aa
PF30995
CABIN1_M 249-920 aa
PF27595
HIR3_bundle 1043-1244 aa
PF30992
CABIN1_C 1409-1841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799888.1 |
Pfam | PF30993 |
CABIN1_N | Repeat | 27 | 198 | 1.2e-97 | 325.2 | CABIN1 N-terminal domain |
XP_057799888.1 |
Pfam | PF30995 |
CABIN1_M | Repeat | 249 | 920 | 4.9e-249 | 829.2 | CABIN1 middle domain |
XP_057799888.1 |
Pfam | PF27595 |
HIR3_bundle | Domain | 1043 | 1244 | 4.1e-25 | 89.2 | HIR3 helical bundle domain |
XP_057799888.1 |
Pfam | PF30992 |
CABIN1_C | Repeat | 1409 | 1841 | 1.4e-230 | 766.6 | CABIN1 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。