当前解析结果
SmilChr03G004650| 统一新 Gene ID | SmilChr03G004650 |
|---|---|
| 名称 | SmilChr03G004650 |
| 描述 | uncharacterized SmilChr03G004650 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64040081 - 64042087 / + |
| NCBI Gene ID | LOC131015482 |
|---|---|
| GeneID | 131015482 |
| locus_tag | - |
| NCBI Name | LOC131015482 |
| 原始查询 | LOC131015482 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:832689]; symbol=AT5G26200; hit=AT5G26200; species=arabidopsis; confidence=high |
| 产物 | Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:832689]; symbol=AT5G26200; hit=AT5G26200; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G26200 (AT5G26200)Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:832689] identity=55.6; qcov=1.01; evalue=1.77e-118; confidence=high |
| Rice | Os10g0397800 (OSJNBb0058B20.12)- identity=57.9; qcov=0.972; evalue=3.33e-92; confidence=high |
| GO | GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015482 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057799890.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.80000 | XP_057799890.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.40000 | XP_057799890.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.40000 | XP_057799890.1 |
| 5 | Chloroplast | 叶绿体 | 0.20000 | XP_057799890.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64040100 |
AGG |
A |
2bp_deletion | frameshift_variant | 93 | A10,A11,A13,A14,A16,A2,A25,A8,B100,B101,B106,B108,B109,B113,B12,B121,B129,B130,B133,B15,B18,B21,B22,B26,B27,B28,B29,B3,B30,B33,B45,B47,B48,B49,B50,B59,B61,B62,B65,B67,B70,B73,B74,B75,B79,B80,B83,B85,B87,B93,B98,C1,C13,C15,C17,C19,C23,C29,C3,C33,C35,C36,C39,C4,C41,C43,C47,C48,C5,C50,C51,C56,C57,C59,C6,C62,C63,C67,C7,C75,C76,C77,C78,C8,C81,C82,C83,C85,D10,D11,D2,D7,D9 |
Chr3:64040188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B19,B45,C42,C72 |
Chr3:64040203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:64040233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B133,B15,C5,C7 |
Chr3:64040239 |
AAC |
A |
2bp_deletion | frameshift_variant | 159 | A1,A11,A13,A14,A15,A16,A19,A2,A22,A23,A24,A25,A5,A6,A7,A8,B1,B100,B101,B103,B105,B106,B107,B109,B11,B110,B114,B12,B122,B124,B125,B127,B129,B13,B130,B132,B133,B136,B138,B15,B18,B19,B2,B20,B21,B22,B23,B24,B27,B28,B29,B3,B32,B33,B34,B37,B40,B41,B42,B43,B45,B47,B49,B50,B52,B54,B55,B56,B57,B59,B6,B61,B62,B63,B64,B65,B67,B69,B70,B73,B74,B75,B76,B78,B79,B8,B81,B82,B83,B85,B87,B89,B9,B93,B94,B96,B98,B99,C1,C10,C11,C13,C14,C15,C17,C18,C19,C2,C21,C23,C27,C29,C3,C30,C31,C34,C35,C36,C39,C4,C40,C41,C43,C45,C47,C48,C49,C50,C51,C52,C53,C56,C57,C59,C6,C61,C62,C63,C65,C67,C69,C72,C76,C77,C78,C8,C81,C82,C83,C84,C85,C86,C87,D10,D11,D2,D5,D7,D9 |
Chr3:64040243 |
C |
CAT |
2bp_insertion | frameshift_variant | 156 | A1,A11,A13,A14,A15,A16,A19,A2,A22,A23,A24,A25,A5,A6,A7,A8,B1,B100,B101,B103,B105,B106,B107,B109,B11,B110,B114,B12,B122,B124,B125,B127,B129,B13,B130,B132,B133,B136,B138,B15,B18,B19,B2,B20,B21,B22,B23,B24,B27,B28,B29,B3,B32,B33,B37,B40,B41,B42,B43,B45,B47,B49,B50,B52,B54,B55,B56,B57,B59,B6,B61,B62,B63,B64,B65,B67,B69,B70,B73,B74,B75,B76,B78,B79,B8,B81,B82,B83,B85,B87,B89,B9,B93,B94,B96,B98,B99,C1,C11,C13,C14,C15,C17,C18,C19,C2,C21,C23,C27,C29,C3,C30,C31,C34,C35,C36,C39,C4,C40,C41,C43,C45,C47,C48,C49,C50,C51,C52,C53,C56,C57,C59,C6,C61,C62,C63,C65,C67,C69,C72,C76,C77,C78,C8,C81,C82,C83,C84,C85,C86,C87,D10,D11,D2,D5,D9 |
Chr3:64040258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,C9,D5 |
Chr3:64040301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:64040308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B56,B84,B96 |
Chr3:64040310 |
GTT |
G |
2bp_deletion | frameshift_variant | 68 | A15,A16,A19,A2,A7,B100,B101,B105,B114,B129,B130,B132,B18,B21,B22,B28,B29,B3,B32,B33,B47,B49,B50,B55,B59,B6,B62,B64,B65,B67,B70,B73,B75,B79,B83,B85,B87,B94,B96,B99,C1,C13,C17,C19,C23,C3,C34,C35,C36,C39,C4,C41,C45,C47,C50,C51,C52,C59,C6,C61,C67,C72,C78,C81,C83,C87,D2,D5 |
Chr3:64040350 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr3:64040358 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B130 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799890.1PF00153
Mito_carr 41-110 aa
PF00153
Mito_carr 126-215 aa
PF00153
Mito_carr 231-317 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799890.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 41 | 110 | 4.3e-52 | 174.5 | Mitochondrial carrier protein |
XP_057799890.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 126 | 215 | 4.3e-52 | 174.5 | Mitochondrial carrier protein |
XP_057799890.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 231 | 317 | 4.3e-52 | 174.5 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。