Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004675`

染色体: Chr03 坐标: 64191424-64206349 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004675`
名称	SmilChr03G004675
描述	myosin-15
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64191424 - 64206349 / `+`

ID 对照

NCBI Gene ID	`LOC131015513`
GeneID	`131015513`
locus_tag	`-`
NCBI Name	`LOC131015513`
原始查询	`LOC131015513`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	myosin-15
产物	myosin-15
Arabidopsis	`AT4G33200` (XI-I) myosin [Source:NCBI gene (formerly Entrezgene);Acc:829456] identity=71.6; qcov=0.999; evalue=0; confidence=high
Rice	`Os06g0488200` - identity=56.6; qcov=1; evalue=0; confidence=high
GO	GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL)
InterPro	-
eggNOG	-
NR	GeneID:131015513

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057799900.1`
2	Cytoplasm	细胞质	0.20000	`XP_057799900.1`
3	Phragmoplast	Phragmoplast	0.20000	`XP_057799900.1`
4	Cell membrane	细胞膜	0.20000	`XP_057799900.1`
5	Nucleus	细胞核	0.00000	`XP_057799900.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64191778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B121,B133,C24
`Chr3:64192036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr3:64193025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B138,B47,B55,C15,C85
`Chr3:64194435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B121,B133,C24
`Chr3:64194478`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B108,B22,C23,C34
`Chr3:64194478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B22,C23,C34
`Chr3:64194567`	`CA`	`C`	1bp_deletion	frameshift_variant	4	B108,B22,C23,C34
`Chr3:64194567`	`CA`	`C`	1bp_deletion	CDS_variant	4	B108,B22,C23,C34
`Chr3:64194890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B94,D7
`Chr3:64194928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B22,C23,C34
`Chr3:64195152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,C28
`Chr3:64195559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799900.1

1516 aa

758

1516

Myosin_head

DIL

PF00063 Myosin_head 60-716 aa PF00612 IQ 756-774 aa PF00612 IQ 780-799 aa PF00612 IQ 803-822 aa PF00612 IQ 829-848 aa PF00612 IQ 853-871 aa PF01843 DIL 1334-1437 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799900.1`	Pfam	`PF00063`	Myosin_head	Domain	60	716	2.5e-252	839.8	Myosin head (motor domain)
`XP_057799900.1`	Pfam	`PF00612`	IQ	Motif	756	774	1.6e-18	65.3	IQ calmodulin-binding motif
`XP_057799900.1`	Pfam	`PF00612`	IQ	Motif	780	799	1.6e-18	65.3	IQ calmodulin-binding motif
`XP_057799900.1`	Pfam	`PF00612`	IQ	Motif	803	822	1.6e-18	65.3	IQ calmodulin-binding motif
`XP_057799900.1`	Pfam	`PF00612`	IQ	Motif	829	848	1.6e-18	65.3	IQ calmodulin-binding motif
`XP_057799900.1`	Pfam	`PF00612`	IQ	Motif	853	871	1.6e-18	65.3	IQ calmodulin-binding motif
`XP_057799900.1`	Pfam	`PF01843`	DIL	Repeat	1334	1437	9.3e-27	94.0	DIL domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943917.1
ATCCAGAAATGACTGTGAGCATTTATTCATTTAAGAAGCTGAAAAAAAGATAAACTAATAAAATTCGAAACTGTTTAGTTTTTGGGCAATTTTTGAGTTTTTTTGACTATGAATCTTCCCCTTCTCTTCGGGCGGGAAGCTGAAAAATCCTCAAATACATAACTCCATGTGAATTAGGGCTCTTAAATTCATCTAGAGTTCATCAAGTTCAATTTTTTTGTGCTATTTGTGTTTGCCGACTTCTGAGATTACATGAGAAA...

CDS

1 records

下载 CDS FASTA

LOC131015513
ATGGCTCTTCGGAAGGGCTTCAAAGTGTGGGTGGAAGACAGAGATTCGGCCTGGGTTGCGGCGGAGGTCGTTGATTTCATCGGAAAACAAGTTCAGGTCATAACTGCCACCGGAAAAAAGGTGGTGGTGGTCGCGGAGAAGTTGCAGCCATGCGACGGGGAGTCGGAACTTGGAGGAGTGGATGATATGACCAAATTGACTTATTTGAATGAGCCTAGTGTTCTTGATAATCTTCAGAGAAGATATGGTCTTAATGAAAT...

Protein

1 records

下载 Protein FASTA

XP_057799900.1
MALRKGFKVWVEDRDSAWVAAEVVDFIGKQVQVITATGKKVVVVAEKLQPCDGESELGGVDDMTKLTYLNEPSVLDNLQRRYGLNEIYTYTGSILIAVNPFTKLPHLYNMYMMEQYKGAPFGELSPHVFAVADASYRAMMSEGRSQSILVSGESGAGKTETTKLIMRYLTYVGGRAIDDDRNVEKQVLESNPLLEAFGNARTIRNDNSSRFGKFVEIQFDSSGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器