Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004678`

染色体: Chr03 坐标: 64219089-64223002 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004678`
名称	SmilChr03G004678
描述	fatty-acid-binding protein 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64219089 - 64223002 / `-`

ID 对照

NCBI Gene ID	`LOC131015516`
GeneID	`131015516`
locus_tag	`-`
NCBI Name	`LOC131015516`
原始查询	`LOC131015516`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	fatty-acid-binding protein 2
产物	fatty-acid-binding protein 2
Arabidopsis	`AT2G26310` (FAP2) Chalcone-flavanone isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817171] identity=49.7; qcov=0.929; evalue=3.88e-115; confidence=high
Rice	`Os02g0778500` - identity=42.2; qcov=1.04; evalue=5.75e-110; confidence=medium
GO	GO:0005504 (fatty acid binding); GO:0009570 (chloroplast stroma); GO:0016872 (intramolecular lyase activity)
KEGG	-
Pfam	PF02431 (Chalcone); PF16035 (Chalcone_2); PF16036 (Chalcone_3)
InterPro	-
eggNOG	-
NR	GeneID:131015516

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057799904.1`
2	Mitochondrion	线粒体	0.60000	`XP_057799904.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057799904.1`
4	Nucleus	细胞核	0.00000	`XP_057799904.1`
5	Chromosome	染色体	0.00000	`XP_057799904.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64219405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:64219904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:64220212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B90,B92
`Chr3:64220983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:64221133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:64221150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B90,B92
`Chr3:64221154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr3:64221183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B135,B33,B84,B99,C18
`Chr3:64221194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B90,B92
`Chr3:64221300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr3:64221451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr3:64221458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B135,B33,B84,B99,C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799904.1

420 aa

210

420

Chalcone_2

Chalcone

Chalcone_3

PF16035 Chalcone_2 237-409 aa PF02431 Chalcone 237-412 aa PF16036 Chalcone_3 292-408 aa

XP_057799905.1

420 aa

210

420

Chalcone_2

Chalcone

Chalcone_3

PF16035 Chalcone_2 237-409 aa PF02431 Chalcone 237-412 aa PF16036 Chalcone_3 292-408 aa

XP_057799906.1

420 aa

210

420

Chalcone_2

Chalcone

Chalcone_3

PF16035 Chalcone_2 237-409 aa PF02431 Chalcone 237-412 aa PF16036 Chalcone_3 292-408 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799904.1`	Pfam	`PF16035`	Chalcone_2	Domain	237	409	8.7e-20	72.1	Chalcone isomerase like
`XP_057799904.1`	Pfam	`PF02431`	Chalcone	Domain	237	412	5.4e-09	36.5	Chalcone-flavanone isomerase
`XP_057799904.1`	Pfam	`PF16036`	Chalcone_3	Domain	292	408	4.3e-07	30.9	Chalcone isomerase-like
`XP_057799905.1`	Pfam	`PF16035`	Chalcone_2	Domain	237	409	8.7e-20	72.1	Chalcone isomerase like
`XP_057799905.1`	Pfam	`PF02431`	Chalcone	Domain	237	412	5.4e-09	36.5	Chalcone-flavanone isomerase
`XP_057799905.1`	Pfam	`PF16036`	Chalcone_3	Domain	292	408	4.3e-07	30.9	Chalcone isomerase-like
`XP_057799906.1`	Pfam	`PF16035`	Chalcone_2	Domain	237	409	8.7e-20	72.1	Chalcone isomerase like
`XP_057799906.1`	Pfam	`PF02431`	Chalcone	Domain	237	412	5.4e-09	36.5	Chalcone-flavanone isomerase
`XP_057799906.1`	Pfam	`PF16036`	Chalcone_3	Domain	292	408	4.3e-07	30.9	Chalcone isomerase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943922.1
AAGAATGAATGTGAACGAGAAAATGGGCCGAAAACATGAGAGAGAGAGAGAGAGCCCAGAAAACTACACGAACAACTCTGAATGAGACCGACCAAAACCAAATAGTAATAATTTATTAGAAAAAGAAAAAAAACGAAGTGCTCAGATTTATTTGGAGAGATCACAACCTTACAACAGAGGTTCTGCTGAAGCATTGGTAGTTGGATATGGGGACTAATTGGTTGTTTTTCGTCGAACCGGATGGGAATGCAGGTGGGGTT...

XM_057943921.1
TCTATTTTACTTGTTTTTTTCTTTATTTCATTCTCTGTTTGTCTGCGTGCGACACCGTCCCACATCAAAGTAATAATATAGTCAAAAAAATTAAATCTTTTTTTTGACGCAACAAAAAAAATTAAATCTTTTTATTAAAGAGCAATCTGGGTCAGACCCATTTTATGGAAAAAGGGTATTTGAATTGAAAAGGAAAAAAACATTGCATCTCGACTTCCTTCGCTTCTCTGTTTCTTGGTGAGAGATCAAACAAGGCATAT...

CDS

3 records

下载 CDS FASTA

LOC131015516
ATGGGGACTAATTGGTTGTTTTTCGTCGAACCGGATGGGAATGCAGGTGGGGTTTTCCCCATTGATCCCATTCTTCCTCATAGTTTGGGGGCTCATTGGATCTCTCACATTGCCTCGTTGGTTGACAACTCGAGGCATCTTTTGGTGCCCGGAAGCATGGCGCTCCAAGAAGCTTTCAGCTGTATGTCGAAATTTGCTGGTGCCCTAGTGATATGGTGCGCCCGTGGCTCCAATGCCAACGTCAGAAGGAAGTCACCGGG...

Protein

3 records

下载 Protein FASTA

XP_057799904.1
MGTNWLFFVEPDGNAGGVFPIDPILPHSLGAHWISHIASLVDNSRHLLVPGSMALQEAFSCMSKFAGALVIWCARGSNANVRRKSPGGDHLGRLSSASTQVRHISSVRRDLTGFFCKLKCSRMSAIPVVFNKISSFALKQLSREAQWLQTFPMLSLGAALVPPLTNVSTNVLAMEAQRITDQKLCEIESRGCGPCNDLHLQSLAWAKTTEPRTGVEFPTMLDNSISGESNSGFTPEILVGTGSRIMTVIRIKSLKVYAFG...

XP_057799905.1
MGTNWLFFVEPDGNAGGVFPIDPILPHSLGAHWISHIASLVDNSRHLLVPGSMALQEAFSCMSKFAGALVIWCARGSNANVRRKSPGGDHLGRLSSASTQVRHISSVRRDLTGFFCKLKCSRMSAIPVVFNKISSFALKQLSREAQWLQTFPMLSLGAALVPPLTNVSTNVLAMEAQRITDQKLCEIESRGCGPCNDLHLQSLAWAKTTEPRTGVEFPTMLDNSISGESNSGFTPEILVGTGSRIMTVIRIKSLKVYAFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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