当前解析结果
SmilChr03G004680| 统一新 Gene ID | SmilChr03G004680 |
|---|---|
| 名称 | SmilChr03G004680 |
| 描述 | guanine nucleotide-binding protein alpha-1 subunit |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64227198 - 64231327 / - |
| NCBI Gene ID | LOC131015517 |
|---|---|
| GeneID | 131015517 |
| locus_tag | - |
| NCBI Name | LOC131015517 |
| 原始查询 | LOC131015517 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | guanine nucleotide-binding protein alpha-1 subunit |
| 产物 | guanine nucleotide-binding protein alpha-1 subunit |
| Arabidopsis | AT2G26300 (GP ALPHA 1)G protein alpha subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:817170] identity=82.8; qcov=0.972; evalue=0; confidence=high |
| Rice | Os05g0333200 (D1)- identity=77.1; qcov=0.919; evalue=0; confidence=high |
| GO | GO:0001664 (G protein-coupled receptor binding); GO:0003924 (GTPase activity); GO:0005834 (heterotrimeric G-protein complex); GO:0007188 (adenylate cyclase-modulating G protein-coupled receptor signaling pathway); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding) |
| KEGG | - |
| Pfam | PF00025 (Arf); PF00503 (G-alpha) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015517 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799907.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057799907.1 |
| 3 | Cell projection | 细胞突起 | 0.40000 | XP_057799907.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057799907.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057799907.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64227541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C19,D10 |
Chr3:64227563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr3:64227611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,C55,C58,C79 |
Chr3:64227651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B11,C32,C68,D2 |
Chr3:64228351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:64228652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C1 |
Chr3:64230730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,B8,C30,C4,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799907.1PF00503
G-alpha 30-382 aa
PF00025
Arf 225-304 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799907.1 |
Pfam | PF00503 |
G-alpha | Domain | 30 | 382 | 3.1e-105 | 352.7 | G-protein alpha subunit |
XP_057799907.1 |
Pfam | PF00025 |
Arf | Domain | 225 | 304 | 1.9e-11 | 44.5 | ADP-ribosylation factor family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。