Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004681`

染色体: Chr03 坐标: 64234590-64236789 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004681`
名称	SmilChr03G004681
描述	uncharacterized SmilChr03G004681
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64234590 - 64236789 / `-`

ID 对照

NCBI Gene ID	`LOC131015519`
GeneID	`131015519`
locus_tag	`-`
NCBI Name	`LOC131015519`
原始查询	`LOC131015519`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832255]; symbol=AT5G21950; hit=AT5G21950; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832255]; symbol=AT5G21950; hit=AT5G21950; species=arabidopsis; confidence=high
Arabidopsis	`AT5G21950` (AT5G21950) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832255] identity=53.2; qcov=1; evalue=8.16e-115; confidence=high
Rice	`Os03g0178500` - identity=44.9; qcov=0.883; evalue=4.51e-70; confidence=medium
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131015519

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057799908.1`
2	Cytosol	细胞质基质	0.40000	`XP_057799909.1`
3	Nucleus	细胞核	0.00000	`XP_057799908.1`
4	Chromosome	染色体	0.00000	`XP_057799908.1`
5	Centromere	着丝粒	0.00000	`XP_057799908.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64235001`	`A`	`AAT`	2bp_insertion	frameshift_variant	55	A14,A4,A9,B100,B101,B105,B114,B122,B136,B139,B15,B22,B24,B25,B26,B29,B3,B38,B39,B4,B52,B56,B6,B70,B74,B82,B83,B87,B88,B93,B96,B97,C1,C11,C13,C19,C2,C20,C31,C35,C38,C39,C41,C44,C47,C5,C6,C65,C69,C7,C70,C81,C9,D1,D5
`Chr3:64235012`	`G`	`A`	EMS_canonical_SNV	stop_gained	20	A1,A13,A15,A22,A7,A9,B124,B34,B40,B50,B63,B91,B99,C21,C3,C52,C71,C74,C77,D8
`Chr3:64235063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr3:64235094`	`T`	`TA`	1bp_insertion	frameshift_variant	75	A14,A16,A18,A2,A20,A23,A24,A6,B10,B102,B105,B107,B109,B11,B110,B111,B112,B115,B117,B123,B125,B126,B127,B128,B131,B132,B133,B14,B140,B15,B16,B2,B20,B21,B25,B28,B30,B31,B37,B40,B41,B46,B55,B57,B6,B60,B66,B71,B72,B73,B89,C1,C10,C12,C24,C40,C42,C45,C5,C55,C57,C58,C59,C6,C62,C63,C64,C66,C67,C7,C75,C82,C83,C84,D11
`Chr3:64235925`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B113
`Chr3:64235925`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B113
`Chr3:64235986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B17,B66,B8,C30
`Chr3:64236054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:64236139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B140,C23
`Chr3:64236154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,C13,C81
`Chr3:64236300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B84,C14,C18
`Chr3:64236321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,C24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799908.1

310 aa

155

310

Abhydrolase_6

Abhydrolase_1

PF12697 Abhydrolase_6 52-250 aa PF00561 Abhydrolase_1 52-283 aa

XP_057799909.1

300 aa

150

300

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 48-280 aa PF00561 Abhydrolase_1 52-285 aa PF12697 Abhydrolase_6 52-290 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799908.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	52	250	5.1e-12	47.6	Alpha/beta hydrolase family
`XP_057799908.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	52	283	1.1e-18	68.6	alpha/beta hydrolase fold
`XP_057799909.1`	Pfam	`PF12146`	Hydrolase_4	Domain	48	280	1.6e-08	34.9	Serine aminopeptidase, S33
`XP_057799909.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	52	285	1.6e-22	81.1	alpha/beta hydrolase fold
`XP_057799909.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	52	290	1.8e-17	65.4	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943926.1
TGGACGGAAAAGTTGTTAGAATATTAATGTCTACTCTTTAGCCATTTTATTAGTTTGCTGAACTTGCTCACCTTTCCTTTTCTAGCGATCGAATTCTAAAACTAATCGAAAATTTCCACAGCTTTTCTTCAATTTTTTTCCACCATTAATAATGGTAACCTCCTGTTTCAGCTTGGTCTCTCTCGCCGGCGGCCTCCTCCGCCGCTCCATCGCGGCGGCTGGGCTCTCCTCCCAGACGGCGGACATCGACGGCGACACCA...

XM_057943925.1
GAAAAGTTGTTAGAATATTAATGTCTACTCTTTAGCCATTTTATTAGTTTGCTGAACTTGCTCACCTTTCCTTTTCTAGCGATCGAATTCTAAAACTAATCGAAAATTTCCACAGCTTTTCTTCAATTTTTTTCCACCATTAATAATGGTAACCTCCTGTTTCAGCTTGGTCTCTCTCGCCGGCGGCCTCCTCCGCCGCTCCATCGCGGCGGCTGGGCTCTCCTCCCAGACGGCGGACATCGACGGCGACACCACCATCC...

CDS

2 records

下载 CDS FASTA

LOC131015519
ATGGTAACCTCCTGTTTCAGCTTGGTCTCTCTCGCCGGCGGCCTCCTCCGCCGCTCCATCGCGGCGGCTGGGCTCTCCTCCCAGACGGCGGACATCGACGGCGACACCACCATCCACTTCTGGGGCCCGCCCGCCGCCACCGCCAAGCCCAAGCTCATCCTCGTCCACGGCTTCGGCCCCGCGAGCATCTGGCAGTGGCGGCGCCAGGTAGCCTTCTTCGCCGGAGAATACGACGTCTACATCCCCGACCTCGTATTCTT...

Protein

2 records

下载 Protein FASTA

XP_057799908.1
MVTSCFSLVSLAGGLLRRSIAAAGLSSQTADIDGDTTIHFWGPPAATAKPKLILVHGFGPASIWQWRRQVAFFAGEYDVYIPDLVFFGESFTRSPARSEVFQATCLARLMENLGVTRYSVVGTSYGGFVAYRMAEMWPERVEKVVIASSAVNLRRSDNARLMKQADVDKIEDLLLPVTAAQLRLSLRFVVSRPPPYVPDFVLNDFIDKLYSENRREKLELLKELNIGKNDTVTLSPLSQEVLIVWGENDQIFLLEKAEEL...

XP_057799909.1
MVTSCFSLVSLAGGLLRRSIAAAGLSSQTADIDGDTTIHFWGPPAATAKPKLILVHGFGPASIWQWRRQVAFFAGEYDVYIPDLVFFGESFTRSPARSEVFQATCLARLMENLGVTRYSVVGTSYGGFVAYRMAEMWPERVEKVVIASSAVNLRRSDNARLMKQADVDKIEDLLLPVTAAQLRLSLRFVVSRPPPYVPDFVLNDFIDKLYSENRREKLELLKELNIGKNDTVTLSPLSQEVLIVWGENDQIFLLEKAEEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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