Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004693`

染色体: Chr03 坐标: 64288398-64293207 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004693`
名称	SmilChr03G004693
描述	DEAD-box ATP-dependent RNA helicase 15
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64288398 - 64293207 / `-`

ID 对照

NCBI Gene ID	`LOC131015534`
GeneID	`131015534`
locus_tag	`-`
NCBI Name	`LOC131015534`
原始查询	`LOC131015534`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 15
产物	DEAD-box ATP-dependent RNA helicase 15
Arabidopsis	`AT5G11170` (UAP56a) DEAD/DEAH box RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830986] identity=93.9; qcov=1; evalue=0; confidence=high
Rice	`Os01g0549700` (AIP1) DEAD-box ATP-dependent RNA helicase 56-like [Source:NCBI gene (formerly Entrezgene);Acc:4326192] identity=89.3; qcov=1; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)); smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII)
InterPro	-
eggNOG	-
NR	GeneID:131015534

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799922.1`
2	Cytoplasm	细胞质	1.00000	`XP_057799922.1`
3	Nucleoplasm	核质	0.20000	`XP_057799922.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057799922.1`
5	Chromosome	染色体	0.00000	`XP_057799922.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64288733`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:64289307`	`AGT`	`A`	2bp_deletion	frameshift_variant	26	A14,A19,B10,B128,B137,B139,B21,B23,B29,B3,B45,B51,B53,B6,B67,B69,B80,B97,C12,C39,C56,C60,C73,D2,D4,D5
`Chr3:64289649`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:64289687`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A22,C22
`Chr3:64289687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,C22
`Chr3:64289694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B124,B40,B53
`Chr3:64290942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,B50,C14
`Chr3:64291342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B35,B75,B80
`Chr3:64292304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:64292371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr3:64292833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:64292879`	`A`	`AT`	1bp_insertion	frameshift_variant	7	B30,C25,C28,C49,C64,C66,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799922.1

428 aa

214

428

DEAD

ResIII

Helicase_C

PF00270 DEAD 72-237 aa PF04851 ResIII 87-234 aa PF00271 Helicase_C 276-384 aa

XP_057799923.1

428 aa

214

428

DEAD

ResIII

Helicase_C

PF00270 DEAD 72-237 aa PF04851 ResIII 87-234 aa PF00271 Helicase_C 276-384 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799922.1`	Pfam	`PF00270`	DEAD	Domain	72	237	5.9e-41	140.7	DEAD/DEAH box helicase
`XP_057799922.1`	Pfam	`PF04851`	ResIII	Family	87	234	4.2e-08	34.0	Type III restriction enzyme, res subunit
`XP_057799922.1`	Pfam	`PF00271`	Helicase_C	Domain	276	384	8.2e-31	107.2	Helicase conserved C-terminal domain
`XP_057799923.1`	Pfam	`PF00270`	DEAD	Domain	72	237	5.9e-41	140.7	DEAD/DEAH box helicase
`XP_057799923.1`	Pfam	`PF04851`	ResIII	Family	87	234	4.2e-08	34.0	Type III restriction enzyme, res subunit
`XP_057799923.1`	Pfam	`PF00271`	Helicase_C	Domain	276	384	8.2e-31	107.2	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943939.1
CGTCTTCCAAGGGCAAATCAGTCAAATCACGTAGCTCTATCATTGAAATCAGAAATCCATTGCCAAACCCTATCTGTCTCCCCCTCCAAAATATCTCATTTCGTACATTTCCTAACATTTTTCTCTGCAGAAATCGCAAATTCCAACCGAAACTGTTCTCAATCGCGTGTTCCTAATCGAATTCAGCAGTTTCAAGCAGCAAAAGCAGCAGCAGAAAAAATGGGCGAGACGAAGGAGACCGAAGCCTACGAGGAGGAGCT...

XM_057943940.1
GCCAAACCCTATCTGTCTCCCCCTCCAAAATATCTCATTTCGTACATTTCCTAACATTTTTCTCTGCAGAAATCGCAAATTCCAACCGAAACTGTTCTCAATCGCGTGTTCCTAATCGAATTCAGCAGGTTAGCGAAGCTGCCTCTTCAATTTCAAGCAGCAAAAGCAGCAGCAGAAAAAATGGGCGAGACGAAGGAGACCGAAGCCTACGAGGAGGAGCTTCTCGACTACGAGGAAGAAGAGGAGAAAGCACCCGATTC...

CDS

2 records

下载 CDS FASTA

LOC131015534
ATGGGCGAGACGAAGGAGACCGAAGCCTACGAGGAGGAGCTTCTCGACTACGAGGAAGAAGAGGAGAAAGCACCCGATTCTGTCGGTGCCAAGGTCAACGGCGAGTCGGTGAAGAAGGGATATGTGGGAATCCACAGTTCAGGATTCAGGGACTTCCTCTTGAAGCCGGAGCTTTTACGTGCTATTGTGGACTCTGGATTTGAACATCCATCAGAAGTTCAACATGAGTGTATTCCTCAAGCTATTCTGGGAATGGATGT...

Protein

2 records

下载 Protein FASTA

XP_057799922.1
MGETKETEAYEEELLDYEEEEEKAPDSVGAKVNGESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT...

XP_057799923.1
MGETKETEAYEEELLDYEEEEEKAPDSVGAKVNGESVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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