Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004701`

染色体: Chr03 坐标: 64320359-64324035 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004701`
名称	SmilChr03G004701
描述	EIN3-binding F-box protein 1-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64320359 - 64324035 / `+`

ID 对照

NCBI Gene ID	`LOC131015541`
GeneID	`131015541`
locus_tag	`-`
NCBI Name	`LOC131015541`
原始查询	`LOC131015541`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	EIN3-binding F-box protein 1-like
产物	EIN3-binding F-box protein 1-like
Arabidopsis	`AT2G25490` (EBF1) EIN3-binding F box protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:817087] identity=52.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0200900` (OsFbox072) - identity=47; qcov=0.927; evalue=2.71e-176; confidence=high
GO	GO:0005515 (protein binding); GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF13516 (LRR_6); PF24758 (LRR_At5g56370); PF25372 (LRR_FBXL15)
InterPro	-
eggNOG	-
NR	GeneID:131015541

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799936.1`
2	Chromosome	染色体	0.00000	`XP_057799936.1`
3	Centromere	着丝粒	0.00000	`XP_057799936.1`
4	Chromatin	染色质	0.00000	`XP_057799936.1`
5	Telomere	端粒	0.00000	`XP_057799936.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64321440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:64321449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B98,C2
`Chr3:64321472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:64321502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr3:64321560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B28,C14,C5,D11
`Chr3:64321626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr3:64321644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,C78
`Chr3:64321645`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:64321691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C14,C49,C57,C77,C9
`Chr3:64321705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C40
`Chr3:64321706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:64321812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799936.1

658 aa

329

658

F-box-like

F-box

LRR_FBXL15

LRR_At5g56370

LRR_6

LRR_FBXL15

LRR_6

LRR_FBXL15

LRR_6

PF12937 F-box-like 60-96 aa PF00646 F-box 63-97 aa PF25372 LRR_FBXL15 187-361 aa PF24758 LRR_At5g56370 207-293 aa PF13516 LRR_6 230-253 aa PF13516 LRR_6 255-278 aa PF25372 LRR_FBXL15 362-457 aa PF13516 LRR_6 363-384 aa PF25372 LRR_FBXL15 465-542 aa PF25372 LRR_FBXL15 548-649 aa PF13516 LRR_6 573-595 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799936.1`	Pfam	`PF12937`	F-box-like	Domain	60	96	2.8e-06	27.7	F-box-like
`XP_057799936.1`	Pfam	`PF00646`	F-box	Domain	63	97	3.8e-05	24.2	F-box domain
`XP_057799936.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	187	361	2.1e-44	152.5	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057799936.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	207	293	2.7e-07	31.2	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057799936.1`	Pfam	`PF13516`	LRR_6	Repeat	230	253	8.9e-28	94.8	Leucine Rich repeat
`XP_057799936.1`	Pfam	`PF13516`	LRR_6	Repeat	255	278	8.9e-28	94.8	Leucine Rich repeat
`XP_057799936.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	362	457	2.1e-44	152.5	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057799936.1`	Pfam	`PF13516`	LRR_6	Repeat	363	384	8.9e-28	94.8	Leucine Rich repeat
`XP_057799936.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	465	542	2.1e-44	152.5	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057799936.1`	Pfam	`PF25372`	LRR_FBXL15	Repeat	548	649	2.1e-44	152.5	F-box/LRR-repeat protein 15, leucine rich repeat domain
`XP_057799936.1`	Pfam	`PF13516`	LRR_6	Repeat	573	595	8.9e-28	94.8	Leucine Rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943953.1
TGGTACATCTTGAACAATTCAAAAATAATGAATGAATAGAAGAAACATTGAACATAGCGAGTAGTTTGGTTCATTGTATGTATCTCTCAGCTGCAGTTTTCTTGATTTGTTAAAGAAGAGAGAGAGAGGGAGAGGGCCCCACCTATTGACAACAAAAGATATGCGTGAGATATTACACCACACCCACACACTTTAGTGTTTTTCATGTACATTAATATATGCATTTGCATTTTCCCCAGTTTGTAGTATCCATCCACCAA...

CDS

1 records

下载 CDS FASTA

LOC131015541
ATGTCTAAAGTCTTTGATTTCAGTGGTGATAATGAGTTCTTTATGTTCCAAAATCCCAAGGGATCGATCCCCTTTGTGTCTCTTGGGAGTCATGTGGATGTGTATTTTCCTCCACGCAAGAGATCTCGAATCAGTGCTCCCTTTGTTGTTACTGAAGATCCGAAGGAGCTGCCTTCGATTGAAGTGCTCCCTGATGAGTGCCTGTTTGAGATATTCAGACGCCTTGGTGGAGGCGAAGAGAGGAGCGCCTGCGCCTCTGT...

Protein

1 records

下载 Protein FASTA

XP_057799936.1
MSKVFDFSGDNEFFMFQNPKGSIPFVSLGSHVDVYFPPRKRSRISAPFVVTEDPKELPSIEVLPDECLFEIFRRLGGGEERSACASVSKRWLMLLSSISADEICGSIAQTVESEVVSDCKKADEQPAKPKEKVEIKSDDEECVDVDPQGYLSRCLEGKKATDVRLAAISVGTASRGGLGKLSIRGNASTRRLTDLGLKVVSRGCPSLRALSLWNLSCVGDEGLSAIATGCRSLEKLDLSHCPAITDKAMIAVAMNCPNLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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