当前解析结果
SmilChr03G004703| 统一新 Gene ID | SmilChr03G004703 |
|---|---|
| 名称 | SmilChr03G004703 |
| 描述 | putative L-ascorbate peroxidase 6 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64328867 - 64332308 / - |
| NCBI Gene ID | LOC131015543 |
|---|---|
| GeneID | 131015543 |
| locus_tag | - |
| NCBI Name | LOC131015543 |
| 原始查询 | LOC131015543 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative L-ascorbate peroxidase 6 |
| 产物 | putative L-ascorbate peroxidase 6 |
| Arabidopsis | AT4G32320 (APX6)ascorbate peroxidase 6 [Source:NCBI gene (formerly Entrezgene);Acc:829366] identity=61.5; qcov=0.813; evalue=5.46e-118; confidence=high |
| Rice | Os08g0522400- identity=60.2; qcov=0.82; evalue=7.47e-115; confidence=high |
| GO | GO:0000302 (response to reactive oxygen species); GO:0004601 (peroxidase activity); GO:0020037 (heme binding); GO:0034599 (cellular response to oxidative stress); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015543 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057799942.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057799942.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799942.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799942.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799942.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64329416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B120,B55 |
Chr3:64329418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,C14,C5 |
Chr3:64329775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,C14,C5,D10 |
Chr3:64329790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,C14,C5,D10 |
Chr3:64330040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,D11 |
Chr3:64330545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:64330572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,C72 |
Chr3:64330785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr3:64330809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B120,C1,C9 |
Chr3:64331006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr3:64331167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr3:64331183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799942.1PF00141
peroxidase 90-291 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799942.1 |
Pfam | PF00141 |
peroxidase | Domain | 90 | 291 | 5.8e-47 | 161.2 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。