Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004711`

染色体: Chr03 坐标: 64364613-64367455 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004711`
名称	SmilChr03G004711
描述	uncharacterized SmilChr03G004711
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64364613 - 64367455 / `-`

ID 对照

NCBI Gene ID	`LOC131015551`
GeneID	`131015551`
locus_tag	`-`
NCBI Name	`LOC131015551`
原始查询	`LOC131015551`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os06g0186900; species=rice; confidence=high
产物	hit=Os06g0186900; species=rice; confidence=high
Arabidopsis	`AT5G67630` (AT5G67630) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836899] identity=84.6; qcov=0.998; evalue=0; confidence=high
Rice	`Os06g0186900` - identity=83.7; qcov=0.994; evalue=0; confidence=high
GO	GO:0000492 (box C/D snoRNP assembly); GO:0000812 (Swr1 complex); GO:0003678 (DNA helicase activity); GO:0005524 (ATP binding); GO:0006338 (chromatin remodeling); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016573 (GO:0016573); GO:0016887 (ATP hydrolysis activity); GO:0031011 (Ino80 complex); GO:0035267 (NuA4 histone acetyltransferase complex); GO:0097255 (R2TP complex)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF03796 (DnaB_C); PF06068 (TIP49); PF17856 (TIP49_C)
InterPro	-
eggNOG	-
NR	GeneID:131015551

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057799952.1`
2	Cytosol	细胞质基质	1.00000	`XP_057799952.1`
3	Nucleus	细胞核	0.60000	`XP_057799952.1`
4	Nucleoplasm	核质	0.60000	`XP_057799952.1`
5	Chromosome	染色体	0.00000	`XP_057799952.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64364925`	`ACG`	`A`	2bp_deletion	frameshift_variant	1	A22
`Chr3:64364925`	`ACG`	`A`	2bp_deletion	CDS_variant	1	A22
`Chr3:64364981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:64365097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:64365120`	`G`	`GCT`	2bp_insertion	frameshift_variant	1	A22
`Chr3:64365120`	`G`	`GCT`	2bp_insertion	CDS_variant	1	A22
`Chr3:64365123`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B90,B92
`Chr3:64365130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,C52
`Chr3:64365131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,C45,C76
`Chr3:64365134`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr3:64365299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr3:64365449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799952.1

468 aa

234

468

TIP49

DnaB_C

AAA

TIP49_C

PF06068 TIP49 17-361 aa PF03796 DnaB_C 62-148 aa PF00004 AAA 69-121 aa PF17856 TIP49_C 367-432 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799952.1`	Pfam	`PF06068`	TIP49	Domain	17	361	2.8e-167	556.9	TIP49 P-loop domain
`XP_057799952.1`	Pfam	`PF03796`	DnaB_C	Domain	62	148	1e-06	29.1	DnaB-like helicase C terminal domain
`XP_057799952.1`	Pfam	`PF00004`	AAA	Domain	69	121	3.9e-09	37.8	ATPase family associated with various cellular activities (AAA)
`XP_057799952.1`	Pfam	`PF17856`	TIP49_C	Domain	367	432	4.7e-25	88.2	TIP49 AAA-lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943969.1
AAAAAACCGTGCAACAAATACCTCTAACTCGAACTCATAAATCATAATCTCAAATTTTGAGGTATAAGTACCATTAACCTTCTGGCTCTAGGCGTCACACACTCACACTGTCACACATACTAGTTTTATTTTGTTTTAACTTAAACAAATAGTAAGAATTTTCGAAATTACTTGAAGTCCAAAACCCTAAACCCTCTTTCATCTTCCTCCTTTTCCTCGGTTGAGCTCCAAATCTCTCTCCCTCTCTCCTCGAAAGCTCA...

CDS

1 records

下载 CDS FASTA

LOC131015551
ATGGCGGAGATAAAGCTCTCAGAGATGCGCGACCTGACGCGAATTGAAAGAATCGGCGCCCATTCCCACATCCGCGGCCTCGGCCTCGACTCCGCCCTCGAGGCCCGCTCCTCCTCCGAGGGCATGGTGGGCCAGACCTCAGCCCGTAAAGCCGCCGGCGTCATCGTCAAGATGGTCCAGGAAGGCAAAATCGCCGGCCGGGCAGTCCTCCTCGCCGGTCAGCCCGGTACGGGCAAAACCGCCATCGCCATGGGCATGGC...

Protein

1 records

下载 Protein FASTA

XP_057799952.1
MAEIKLSEMRDLTRIERIGAHSHIRGLGLDSALEARSSSEGMVGQTSARKAAGVIVKMVQEGKIAGRAVLLAGQPGTGKTAIAMGMAKSIGQETPFAMLAGSELFSLEMSKTEALMQAFRKAIGVRIKEETEVIEGEVVEIQIDRPAVAGAASKTGKLTLKTTDMETVYDLGGKMIEALGKEKVQSGDVIGIDKASGKITKLGRSFSRSRDYDAMGPQTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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