Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004713`

染色体: Chr03 坐标: 64383621-64386316 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004713`
名称	SmilChr03G004713
描述	uncharacterized SmilChr03G004713
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	64383621 - 64386316 / `-`

ID 对照

NCBI Gene ID	`LOC131015553`
GeneID	`131015553`
locus_tag	`-`
NCBI Name	`LOC131015553`
原始查询	`LOC131015553`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229]; symbol=ECT7; hit=AT1G48110; species=arabidopsis; confidence=weak
产物	evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229]; symbol=ECT7; hit=AT1G48110; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G48110` (ECT7) evolutionarily conserved C-terminal region 7 [Source:NCBI gene (formerly Entrezgene);Acc:841229] identity=54.3; qcov=0.281; evalue=1.62e-48; confidence=weak
Rice	`Os03g0317000` - identity=54.6; qcov=0.262; evalue=5.11e-45; confidence=weak
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0061157 (mRNA destabilization)
KEGG	-
Pfam	PF04146 (YTH); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131015553

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799955.1`
2	Cytoplasm	细胞质	0.60000	`XP_057799955.1`
3	Cytosol	细胞质基质	0.40000	`XP_057799955.1`
4	Chromosome	染色体	0.00000	`XP_057799955.1`
5	Centromere	着丝粒	0.00000	`XP_057799955.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:64383852`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr3:64384041`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,A25,D2
`Chr3:64384079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr3:64384107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B86,C18,C55
`Chr3:64384137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B68
`Chr3:64384466`	`CCA`	`C`	2bp_deletion	frameshift_variant	2	A24,D2
`Chr3:64384466`	`CCA`	`C`	2bp_deletion	CDS_variant	2	A24,D2
`Chr3:64384476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,D2
`Chr3:64384478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,D2
`Chr3:64384610`	`GA`	`G`	1bp_deletion	frameshift_variant	210	A1,A10,A13,A14,A15,A16,A18,A19,A21,A22,A23,A25,A4,A6,A7,A8,A9,B1,B10,B101,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B115,B117,B118,B119,B12,B120,B122,B124,B126,B127,B128,B129,B13,B131,B134,B135,B136,B137,B138,B139,B14,B140,B16,B17,B18,B19,B2,B20,B22,B23,B25,B26,B28,B29,B3,B30,B31,B33,B34,B35,B36,B37,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B49,B5,B51,B52,B53,B54,B55,B56,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B90,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C2,C20,C21,C22,C23,C25,C26,C27,C28,C29,C3,C30,C31,C32,C34,C35,C38,C39,C40,C41,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C6,C60,C68,C69,C70,C71,C72,C75,C76,C77,C78,C79,C8,C80,C81,C82,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D7,D9
`Chr3:64384628`	`CA`	`C`	1bp_deletion	frameshift_variant	14	A2,B13,B133,B15,B21,B27,B69,C16,C22,C41,C46,C7,C85,D4
`Chr3:64384799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B140,B62,B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799955.1

624 aa

312

624

FBA_3

FBA_1

YTH

PF08268 FBA_3 22-216 aa PF07734 FBA_1 52-222 aa PF04146 YTH 485-619 aa

XP_057799956.1

622 aa

311

622

FBA_3

FBA_1

YTH

PF08268 FBA_3 22-216 aa PF07734 FBA_1 52-222 aa PF04146 YTH 485-617 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799955.1`	Pfam	`PF08268`	FBA_3	Repeat	22	216	3e-11	43.6	F-box associated beta propeller domain
`XP_057799955.1`	Pfam	`PF07734`	FBA_1	Repeat	52	222	1.7e-16	60.9	F-box associated beta propeller domain
`XP_057799955.1`	Pfam	`PF04146`	YTH	Domain	485	619	5.1e-25	88.5	YT521-B-like domain
`XP_057799956.1`	Pfam	`PF08268`	FBA_3	Repeat	22	216	2.9e-11	43.7	F-box associated beta propeller domain
`XP_057799956.1`	Pfam	`PF07734`	FBA_1	Repeat	52	222	1.6e-16	60.9	F-box associated beta propeller domain
`XP_057799956.1`	Pfam	`PF04146`	YTH	Domain	485	617	3.8e-27	95.4	YT521-B-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943973.1
CGAGCATTTCATTCCCTTTATTCTTCTTCTAAATCTATCAATTTTTGATCGACGATGAATAATTCCGGGGAGAAACGGCTTCTTGTGAAACGTAACCATGGAAAGGGTGGTATGTTTTATTTAACTCCTCTTTCTCCGCGAGATTTATCTGAAATATCTGAAGAAAGTTTCGACCTCCCTTTTCTGGATCCAAGCACATCTACTCTTTGTAACAGTTGCGGGGGTTTGTTGTTTTTCATCGATTATCCTGGCACTGTTGG...

XM_057943972.1
CGAGCATTTCATTCCCTTTATTCTTCTTCTAAATCTATCAATTTTTGATCGACGATGAATAATTCCGGGGAGAAACGGCTTCTTGTGAAACGTAACCATGGAAAGGGTGGTATGTTTTATTTAACTCCTCTTTCTCCGCGAGATTTATCTGAAATATCTGAAGAAAGTTTCGACCTCCCTTTTCTGGATCCAAGCACATCTACTCTTTGTAACAGTTGCGGGGGTTTGTTGTTTTTCATCGATTATCCTGGCACTGTTGG...

CDS

2 records

下载 CDS FASTA

LOC131015553
ATGAATAATTCCGGGGAGAAACGGCTTCTTGTGAAACGTAACCATGGAAAGGGTGGTATGTTTTATTTAACTCCTCTTTCTCCGCGAGATTTATCTGAAATATCTGAAGAAAGTTTCGACCTCCCTTTTCTGGATCCAAGCACATCTACTCTTTGTAACAGTTGCGGGGGTTTGTTGTTTTTCATCGATTATCCTGGCACTGTTGGTTATCTTTACACTGGACATGGTTATCTTTGCAACCCCACAACCCAACAGGTTCA...

Protein

2 records

下载 Protein FASTA

XP_057799955.1
MNNSGEKRLLVKRNHGKGGMFYLTPLSPRDLSEISEESFDLPFLDPSTSTLCNSCGGLLFFIDYPGTVGYLYTGHGYLCNPTTQQVQIIPSKEASPSPDYVNILLGGCVGYDSKSDDYKILGIWERNYRPSGPAIRTFELYSLRNNSWKEIPTLTAFMAKMLRCGIEKIIYVRGKCYWLCATASGVMSFDYSEESFSYLPLPRKAHIFRFSLVKFNDEDLLGMVYCGRRGDSELGYYFQAWVWREGWDNMFCVSLGGAVD...

XP_057799956.1
MNNSGEKRLLVKRNHGKGGMFYLTPLSPRDLSEISEESFDLPFLDPSTSTLCNSCGGLLFFIDYPGTVGYLYTGHGYLCNPTTQQVQIIPSKEASPSPDYVNILLGGCVGYDSKSDDYKILGIWERNYRPSGPAIRTFELYSLRNNSWKEIPTLTAFMAKMLRCGIEKIIYVRGKCYWLCATASGVMSFDYSEESFSYLPLPRKAHIFRFSLVKFNDEDLLGMVYCGRRGDSELGYYFQAWVWREGWDNMFCVSLGGAVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器