当前解析结果
SmilChr03G004723| 统一新 Gene ID | SmilChr03G004723 |
|---|---|
| 名称 | SmilChr03G004723 |
| 描述 | uncharacterized SmilChr03G004723 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 64435554 - 64443378 / + |
| NCBI Gene ID | LOC131015563 |
|---|---|
| GeneID | 131015563 |
| locus_tag | - |
| NCBI Name | LOC131015563 |
| 原始查询 | LOC131015563 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:817070]; symbol=AT2G25320; hit=AT2G25320; species=arabidopsis; confidence=high |
| 产物 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:817070]; symbol=AT2G25320; hit=AT2G25320; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G25320 (AT2G25320)TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:817070] identity=69.5; qcov=0.983; evalue=0; confidence=high |
| Rice | Os02g0613400- identity=63.5; qcov=0.176; evalue=2.24e-115; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00917 (MATH); PF22486 (MATH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015563 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057799974.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057799974.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057799974.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799974.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799974.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:64435964 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B33 |
Chr3:64435964 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B33 |
Chr3:64436026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,B20,B76,B9 |
Chr3:64436073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C73,D6 |
Chr3:64436110 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr3:64436124 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | C22 |
Chr3:64436124 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | C22 |
Chr3:64436144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,B62 |
Chr3:64436261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr3:64436380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B40,C70,C75,C81 |
Chr3:64436791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:64437179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799974.1PF22486
MATH_2 69-196 aa
PF00917
MATH 73-198 aa
PF22486
MATH_2 237-370 aa
PF22486
MATH_2 407-541 aa
PF00917
MATH 437-543 aa
PF22486
MATH_2 575-697 aa
PF00917
MATH 586-680 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799974.1 |
Pfam | PF22486 |
MATH_2 | Domain | 69 | 196 | 1.8e-84 | 281.5 | MATH domain |
XP_057799974.1 |
Pfam | PF00917 |
MATH | Domain | 73 | 198 | 2.8e-26 | 92.7 | MATH domain |
XP_057799974.1 |
Pfam | PF22486 |
MATH_2 | Domain | 237 | 370 | 1.8e-84 | 281.5 | MATH domain |
XP_057799974.1 |
Pfam | PF22486 |
MATH_2 | Domain | 407 | 541 | 1.8e-84 | 281.5 | MATH domain |
XP_057799974.1 |
Pfam | PF00917 |
MATH | Domain | 437 | 543 | 2.8e-26 | 92.7 | MATH domain |
XP_057799974.1 |
Pfam | PF22486 |
MATH_2 | Domain | 575 | 697 | 1.8e-84 | 281.5 | MATH domain |
XP_057799974.1 |
Pfam | PF00917 |
MATH | Domain | 586 | 680 | 2.8e-26 | 92.7 | MATH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。