当前解析结果
SmilChr01G000249| 统一新 Gene ID | SmilChr01G000249 |
|---|---|
| 名称 | SmilChr01G000249 |
| 描述 | uncharacterized SmilChr01G000249 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 4674859 - 4676414 / - |
| NCBI Gene ID | LOC131015608 |
|---|---|
| GeneID | 131015608 |
| locus_tag | - |
| NCBI Name | LOC131015608 |
| 原始查询 | LOC131015608 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | stress response NST1-like protein (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:825437]; symbol=AT3G62630; hit=AT3G62630; species=arabidopsis; confidence=high |
| 产物 | stress response NST1-like protein (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:825437]; symbol=AT3G62630; hit=AT3G62630; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G62630 (AT3G62630)stress response NST1-like protein (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:825437] identity=53.7; qcov=1.05; evalue=2.69e-93; confidence=high |
| Rice | Os03g0303100- identity=39.8; qcov=1.03; evalue=1.04e-41; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF07816 (DUF1645) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015608 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057800035.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057800035.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057800035.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057800035.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057800035.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:4675151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr1:4675205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,B40,B89 |
Chr1:4675258 |
GC |
G |
1bp_deletion | frameshift_variant | 45 | A10,A3,B10,B101,B114,B119,B125,B13,B137,B2,B20,B3,B30,B32,B38,B45,B55,B56,B6,B69,B74,B75,B89,B94,C12,C2,C22,C26,C42,C46,C5,C50,C55,C6,C61,C65,C68,C72,C75,C79,C80,C81,C82,C9,D3 |
Chr1:4675260 |
GGC |
G |
2bp_deletion | frameshift_variant | 41 | A10,A3,B10,B101,B114,B119,B125,B137,B2,B20,B3,B32,B38,B45,B55,B56,B6,B69,B74,B75,B89,B94,C12,C2,C26,C42,C46,C5,C50,C55,C6,C65,C68,C72,C75,C79,C80,C81,C82,C9,D3 |
Chr1:4675263 |
AC |
A |
1bp_deletion | frameshift_variant | 32 | A10,A3,B10,B101,B119,B125,B137,B2,B20,B45,B55,B56,B6,B69,B75,B89,B94,C12,C2,C26,C5,C50,C6,C65,C68,C72,C75,C79,C80,C81,C9,D3 |
Chr1:4675268 |
CCT |
C |
2bp_deletion | frameshift_variant | 30 | A10,A3,B10,B101,B119,B125,B137,B2,B20,B45,B55,B56,B6,B69,B75,B89,B94,C12,C2,C26,C5,C6,C65,C68,C72,C75,C79,C81,C9,D3 |
Chr1:4675319 |
TC |
T |
1bp_deletion | frameshift_variant | 14 | A10,B125,B45,B55,B56,B75,B94,C2,C26,C5,C65,C68,C81,C9 |
Chr1:4675337 |
C |
CTT |
2bp_insertion | frameshift_variant | 12 | A10,B45,B55,B56,B75,B94,C2,C26,C5,C65,C68,C81 |
Chr1:4675348 |
T |
TG |
1bp_insertion | frameshift_variant | 10 | A10,B45,B56,B75,B94,C2,C26,C65,C68,C81 |
Chr1:4675401 |
C |
CT |
1bp_insertion | frameshift_variant | 10 | A10,B45,B56,B94,C2,C20,C5,C65,C68,C81 |
Chr1:4675422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B90,B92 |
Chr1:4675428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,B50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800035.1PF07816
DUF1645 101-328 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800035.1 |
Pfam | PF07816 |
DUF1645 | Family | 101 | 328 | 3.9e-41 | 142.5 | Protein of unknown function (DUF1645) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。