Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001753`

染色体: Chr03 坐标: 23809599-23813666 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001753`
名称	SmilChr03G001753
描述	uncharacterized SmilChr03G001753
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	23809599 - 23813666 / `+`

ID 对照

NCBI Gene ID	`LOC131015672`
GeneID	`131015672`
locus_tag	`-`
NCBI Name	`LOC131015672`
原始查询	`LOC131015672`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GPI-anchored adhesin-like protein, putative (DUF3741) [Source:NCBI gene (formerly Entrezgene);Acc:827901]; symbol=TRM15; hit=AT4G00440; species=arabidopsis; confidence=weak
产物	GPI-anchored adhesin-like protein, putative (DUF3741) [Source:NCBI gene (formerly Entrezgene);Acc:827901]; symbol=TRM15; hit=AT4G00440; species=arabidopsis; confidence=weak
Arabidopsis	`AT4G00440` (TRM15) GPI-anchored adhesin-like protein, putative (DUF3741) [Source:NCBI gene (formerly Entrezgene);Acc:827901] identity=24.9; qcov=1.04; evalue=7.54e-35; confidence=weak
Rice	`Os10g0550000` (OSJNBa0082M15.1) - identity=23.5; qcov=0.815; evalue=5.95e-20; confidence=weak
GO	-
KEGG	-
Pfam	PF12552 (DUF3741); PF14309 (DUF4378)
InterPro	-
eggNOG	-
NR	GeneID:131015672

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057800075.1`
2	Cytoplasm	细胞质	0.40000	`XP_057800075.1`
3	Nucleus	细胞核	0.20000	`XP_057800075.1`
4	Chromosome	染色体	0.00000	`XP_057800075.1`
5	Centromere	着丝粒	0.00000	`XP_057800075.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:23811026`	`TTG`	`T`	2bp_deletion	frameshift_variant	69	A10,A13,A2,A22,A24,A3,A8,B10,B103,B104,B105,B106,B112,B113,B118,B12,B120,B121,B124,B125,B129,B132,B16,B17,B19,B2,B31,B33,B37,B39,B40,B47,B55,B59,B64,B69,B70,B71,B79,B80,B81,B82,C11,C12,C19,C21,C25,C27,C28,C36,C38,C39,C45,C46,C49,C50,C52,C54,C6,C63,C67,C69,C72,C74,C76,C77,C78,C80,D4
`Chr3:23811059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B10,B132,C50,C6
`Chr3:23811107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B10,B132
`Chr3:23811138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,A6
`Chr3:23811964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:23812119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B71
`Chr3:23812125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:23812470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B5,B57,C28
`Chr3:23812907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B52,B9
`Chr3:23812984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:23812990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B14,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800075.1

856 aa

428

856

DUF3741

DUF4378

PF12552 DUF3741 213-268 aa PF14309 DUF4378 691-834 aa

XP_057800076.1

852 aa

426

852

DUF3741

DUF4378

PF12552 DUF3741 213-268 aa PF14309 DUF4378 687-830 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800075.1`	Pfam	`PF12552`	DUF3741	Domain	213	268	1.9e-10	41.6	Protein of unknown function (DUF3741)
`XP_057800075.1`	Pfam	`PF14309`	DUF4378	Domain	691	834	8.4e-22	79.0	LONGIFOLIA 1/2-like C-terminal domain
`XP_057800076.1`	Pfam	`PF12552`	DUF3741	Domain	213	268	1.9e-10	41.6	Protein of unknown function (DUF3741)
`XP_057800076.1`	Pfam	`PF14309`	DUF4378	Domain	687	830	8.3e-22	79.0	LONGIFOLIA 1/2-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944092.1
AAATGAGATGGGTTAATTTATTTTAAGATCTTCCTTGAGTTGAAAGATTTGGAGGAAATAAATACATGGTGTTGCCTATTTTGGCCATAAATTGCAGTCAATGTCATACCAAGACATAAACTAATGCTACTTGCATCAGTACAAATGCATACATACAAACAAACAAATGATGCCCTTTTGGTGGCATTTTCCTTCCCCCACTATCTCTTCATTTTCAAGAGCTGTGTTGATAGGAATAGTTAGTTCCTGATGCCTTGTAT...

XM_057944093.1
ATAAATTGCAGTCAATGTCATACCAAGACATAAACTAATGCTACTTGCATCAGTACAAATGCATACATACAAACAAACAAATGATGCCCTTTTGGTGGCATTTTCCTTCCCCCACTATCTCTTCATTTTCAAGAGCTGTGTTGATAGGAATAGTTAGTTCCTGATGCCTTGTATTCCTACCCCAACACCCCTTTTTCTGCTGAAAGATATGCATGATTGTTAGGGAATTGTTGAAGAATATTATTTTTTTTATGAATTTT...

CDS

2 records

下载 CDS FASTA

LOC131015672
ATGGCAAGAAGATCATCAAGAATTCAAGAAGTTGATGAGAAAAATGAAGTGAACTGCATGTGGGGATTGCTGAGCATCCTCGAATCATGTCAAGGTCGTCCCAGTCATAAGGTGATCTCCAATGGGAGAGCAGCCAACAGAAACATCATCGATTACCCGAGACCACTTGACGCGATTGCCTGCTTCGATGAAGAATGTCGAAAGATTCATAATGGGGCAGGTCTGAGAAGTAGTGTTGGAGTTGAAGGTAAAGGCAGAGG...

Protein

2 records

下载 Protein FASTA

XP_057800075.1
MARRSSRIQEVDEKNEVNCMWGLLSILESCQGRPSHKVISNGRAANRNIIDYPRPLDAIACFDEECRKIHNGAGLRSSVGVEGKGRGARGCIGGEMPVEQHTRKRDVVKRQQHAKMDGELVDQVTKSHRKTRKSSQGVYQSSSPCCSSNAARLMNELPSTSAEKSLNKLTLAAILGAVYSQNHQQEIKLSEYLQRSRFLGKYDEVDEINIQHVQMRAKAFLDQTYINRRFVLGEGRSSESKSFSNALEVLSSKRDLFMEL...

XP_057800076.1
MARRSSRIQEVDEKNEVNCMWGLLSILESCQGRPSHKVISNGRAANRNIIDYPRPLDAIACFDEECRKIHNGAGLRSSVGVEGKGRGARGCIGGEMPVEQHTRKRDVVKRQQHAKMDGELVDQVTKSHRKTRKSSQGVYQSSSPCCSSNAARLMNELPSTSAEKSLNKLTLAAILGAVYSQNHQQEIKLSEYLQRSRFLGKYDEVDEINIQHVQMRAKAFLDQTYINRRFVLGEGRSSESKSFSNALEVLSSKRDLFMEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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