当前解析结果
SmilChr03G001758| 统一新 Gene ID | SmilChr03G001758 |
|---|---|
| 名称 | SmilChr03G001758 |
| 描述 | transcription factor EGL1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 23931409 - 23935822 / - |
| NCBI Gene ID | LOC131015675 |
|---|---|
| GeneID | 131015675 |
| locus_tag | - |
| NCBI Name | LOC131015675 |
| 原始查询 | LOC131015675 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor EGL1-like |
| 产物 | transcription factor EGL1-like |
| Arabidopsis | AT5G41315 (GL3)basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834133] identity=42.6; qcov=1.05; evalue=2.99e-157; confidence=medium |
| Rice | Os04g0557800 (Pl)- identity=35.1; qcov=0.989; evalue=9.91e-99; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF00010 (HLH); PF14215 (bHLH-MYC_N); PF22754 (bHLH-TF_ACT-like_plant); PF23177 (bHLH_IRO3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015675 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057800079.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057800079.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057800079.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057800079.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057800079.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:23932060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr3:23932224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr3:23932245 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | C15,C61 |
Chr3:23932245 |
C |
CT |
1bp_insertion | CDS_variant | 2 | C15,C61 |
Chr3:23932488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,B82 |
Chr3:23932803 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B129,B132,B2,C12 |
Chr3:23932904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr3:23932923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,B9 |
Chr3:23932941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B53 |
Chr3:23932967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,B71 |
Chr3:23933275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,D7 |
Chr3:23933277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057800079.1PF14215
bHLH-MYC_N 19-199 aa
PF00010
HLH 431-478 aa
PF23177
bHLH_IRO3 434-493 aa
PF22754
bHLH-TF_ACT-like_plant 555-632 aa
XP_057800080.1PF14215
bHLH-MYC_N 19-199 aa
PF00010
HLH 431-478 aa
PF23177
bHLH_IRO3 434-493 aa
PF22754
bHLH-TF_ACT-like_plant 555-632 aa
XP_057800082.1PF14215
bHLH-MYC_N 19-199 aa
PF00010
HLH 431-478 aa
PF23177
bHLH_IRO3 434-493 aa
PF22754
bHLH-TF_ACT-like_plant 555-632 aa
XP_057800083.1PF14215
bHLH-MYC_N 19-199 aa
PF00010
HLH 431-478 aa
PF23177
bHLH_IRO3 434-493 aa
PF22754
bHLH-TF_ACT-like_plant 555-632 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800079.1 |
Pfam | PF14215 |
bHLH-MYC_N | Family | 19 | 199 | 1.3e-47 | 163.1 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
XP_057800079.1 |
Pfam | PF00010 |
HLH | Domain | 431 | 478 | 1.4e-13 | 51.1 | Helix-loop-helix DNA-binding domain |
XP_057800079.1 |
Pfam | PF23177 |
bHLH_IRO3 | Domain | 434 | 493 | 6.7e-08 | 33.5 | Iron-related transcription factor 3 bHLH domain |
XP_057800079.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 555 | 632 | 1.5e-13 | 51.3 | Plant bHLH transcription factor, ACT-like domain |
XP_057800080.1 |
Pfam | PF14215 |
bHLH-MYC_N | Family | 19 | 199 | 1.3e-47 | 163.1 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
XP_057800080.1 |
Pfam | PF00010 |
HLH | Domain | 431 | 478 | 1.4e-13 | 51.1 | Helix-loop-helix DNA-binding domain |
XP_057800080.1 |
Pfam | PF23177 |
bHLH_IRO3 | Domain | 434 | 493 | 6.7e-08 | 33.5 | Iron-related transcription factor 3 bHLH domain |
XP_057800080.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 555 | 632 | 1.5e-13 | 51.3 | Plant bHLH transcription factor, ACT-like domain |
XP_057800082.1 |
Pfam | PF14215 |
bHLH-MYC_N | Family | 19 | 199 | 1.3e-47 | 163.1 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
XP_057800082.1 |
Pfam | PF00010 |
HLH | Domain | 431 | 478 | 1.4e-13 | 51.1 | Helix-loop-helix DNA-binding domain |
XP_057800082.1 |
Pfam | PF23177 |
bHLH_IRO3 | Domain | 434 | 493 | 6.7e-08 | 33.5 | Iron-related transcription factor 3 bHLH domain |
XP_057800082.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 555 | 632 | 1.5e-13 | 51.3 | Plant bHLH transcription factor, ACT-like domain |
XP_057800083.1 |
Pfam | PF14215 |
bHLH-MYC_N | Family | 19 | 199 | 1.3e-47 | 163.1 | bHLH-MYC and R2R3-MYB transcription factors N-terminal |
XP_057800083.1 |
Pfam | PF00010 |
HLH | Domain | 431 | 478 | 1.4e-13 | 51.1 | Helix-loop-helix DNA-binding domain |
XP_057800083.1 |
Pfam | PF23177 |
bHLH_IRO3 | Domain | 434 | 493 | 6.7e-08 | 33.5 | Iron-related transcription factor 3 bHLH domain |
XP_057800083.1 |
Pfam | PF22754 |
bHLH-TF_ACT-like_plant | Domain | 555 | 632 | 1.5e-13 | 51.3 | Plant bHLH transcription factor, ACT-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。