Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001808`

染色体: Chr03 坐标: 24677312-24681146 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001808`
名称	SmilChr03G001808
描述	uncharacterized SmilChr03G001808
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	24677312 - 24681146 / `-`

ID 对照

NCBI Gene ID	`LOC131015701`
GeneID	`131015701`
locus_tag	`-`
NCBI Name	`LOC131015701`
原始查询	`LOC131015701`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bromo-adjacent domain protein, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:826749]; symbol=AT4G11450; hit=AT4G11450; species=arabidopsis; confidence=medium
产物	bromo-adjacent domain protein, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:826749]; symbol=AT4G11450; hit=AT4G11450; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G11450` (AT4G11450) bromo-adjacent domain protein, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:826749] identity=39; qcov=1.03; evalue=2.22e-126; confidence=medium
Rice	`Os03g0105800` - identity=38.9; qcov=0.577; evalue=1.08e-84; confidence=medium
GO	-
KEGG	-
Pfam	PF12043 (DUF3527)
InterPro	-
eggNOG	-
NR	GeneID:131015701

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057800099.1`
2	Nucleus	细胞核	0.20000	`XP_057800099.1`
3	Cytoplasm	细胞质	0.20000	`XP_057800099.1`
4	Chromosome	染色体	0.00000	`XP_057800099.1`
5	Centromere	着丝粒	0.00000	`XP_057800099.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:24677810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B7,B8,C58,C85
`Chr3:24677894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B47,B57,B78,C33,C60
`Chr3:24678198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B129,B132,B2,C12
`Chr3:24678573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B71
`Chr3:24678712`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B32,B73,B74,C47,C78
`Chr3:24678831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B135,B7,C58,C85
`Chr3:24678832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:24678876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B71
`Chr3:24678903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B48,D11,D5
`Chr3:24678904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:24678933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,C13,C25,C5
`Chr3:24679005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800099.1

726 aa

363

726

DUF3527

PF12043 DUF3527 315-660 aa

XP_057800100.1

726 aa

363

726

DUF3527

PF12043 DUF3527 315-660 aa

XP_057800101.1

726 aa

363

726

DUF3527

PF12043 DUF3527 315-660 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800099.1`	Pfam	`PF12043`	DUF3527	Family	315	660	1.4e-100	337.9	Domain of unknown function (DUF3527)
`XP_057800100.1`	Pfam	`PF12043`	DUF3527	Family	315	660	1.4e-100	337.9	Domain of unknown function (DUF3527)
`XP_057800101.1`	Pfam	`PF12043`	DUF3527	Family	315	660	1.4e-100	337.9	Domain of unknown function (DUF3527)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944116.1
ACGTCAAAAAATGGTCACACTGTTAAACACACACACTCACTCACCTCACTCTCACACACACATATGGTGAGTCAAACAAACTGGCTTTTGAGGTGGACAGTGAAATTAGGCCTCTGCAGCTCTGTGTCCCTCCATCCTGAACTGTTCATGTGATTCGAGAAAAGAGAGAGAGAGAGATCCCTTCATCCCCAAACAAAGGAGGATGTGTGAGTGACTATGGAATTAGACTTCGACAAATATTGTGTTGTAGATGGAAGTCC...

XM_057944117.1
TACTTATTTAACTTTACTGTTGGTGGGCTGCTTCTGTTTCTCATTGTTTTTATTTTTATTTTTTCTGATTTCACCATTTCTCTACTTTTTTTGATTCTTTGGCATAAAAAAAAAAGAATAAATAAAAAATCTTACTGCTGAAAGTTGTTAGACAAGTGGTGCTTTTACATAATCTTTTGTGAATGTGAGACTGCATTTTTCTCATTCAAGCCTTTGAGCTGAAGAGAAGGAGCAAATGATTGCAATTTGGTTGGGTTTTT...

CDS

3 records

下载 CDS FASTA

LOC131015701
ATGGAATTAGACTTCGACAAATATTGTGTTGTAGATGGAAGTCCTACAACTGTGCTTCCAGCTCCACGACGTCGTTCTAGAAAATCAAATAGTAAGCTCAAATGTGGGAATGAGCTGCTCAGCCTCAATGAAGAGTTCACTGAGATTAGGTTTAATCGTTACCGTAGTGCATCGTGTAGAGATGTCCCAAAAACCCCTCGGGAAGGTCATCAACTGCTGAAGAGGGGCTCTGTGTACCAGAGCTCCAAAGATGTGAGATT...

Protein

3 records

下载 Protein FASTA

XP_057800099.1
MELDFDKYCVVDGSPTTVLPAPRRRSRKSNSKLKCGNELLSLNEEFTEIRFNRYRSASCRDVPKTPREGHQLLKRGSVYQSSKDVRLMRRSDDVVSRKKIEFSRGSASAFSVGIIDSLCSLDEESPLVERGVEQSTSSSCKKQQELHSRSSIRSSFDPIPERTSLKKTSSSCKSKKQSESAVDTTDDGDKRCQGRDAVSTLHKSLSAKLALPHSPAHSDSDGSKASSPRGRLHPVLKMFDPFVKSKSHRSPLNCVKENSS...

XP_057800100.1
MELDFDKYCVVDGSPTTVLPAPRRRSRKSNSKLKCGNELLSLNEEFTEIRFNRYRSASCRDVPKTPREGHQLLKRGSVYQSSKDVRLMRRSDDVVSRKKIEFSRGSASAFSVGIIDSLCSLDEESPLVERGVEQSTSSSCKKQQELHSRSSIRSSFDPIPERTSLKKTSSSCKSKKQSESAVDTTDDGDKRCQGRDAVSTLHKSLSAKLALPHSPAHSDSDGSKASSPRGRLHPVLKMFDPFVKSKSHRSPLNCVKENSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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