当前解析结果
SmilChr03G001825| 统一新 Gene ID | SmilChr03G001825 |
|---|---|
| 名称 | SmilChr03G001825 |
| 描述 | probable folate-biopterin transporter 7 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 25000658 - 25003532 / - |
| NCBI Gene ID | LOC131015716 |
|---|---|
| GeneID | 131015716 |
| locus_tag | - |
| NCBI Name | LOC131015716 |
| 原始查询 | LOC131015716 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable folate-biopterin transporter 7 |
| 产物 | probable folate-biopterin transporter 7 |
| Arabidopsis | AT1G64890 (AT1G64890)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842797] identity=58.4; qcov=0.886; evalue=1.91e-125; confidence=high |
| Rice | Os05g0389400- identity=51.9; qcov=0.924; evalue=2.77e-116; confidence=high |
| GO | GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF03092 (BT1); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015716 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057800121.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057800121.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057800120.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057800120.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057800121.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:25000876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr3:25000943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B114,C54,C82 |
Chr3:25000990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr3:25001159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr3:25001173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr3:25001219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B49,B87 |
Chr3:25001231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:25001326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B49,B87 |
Chr3:25001465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,C60 |
Chr3:25001476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr3:25003002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800120.1PF03092
BT1 22-434 aa
PF07690
MFS_1 57-382 aa
XP_057800121.1PF03092
BT1 47-393 aa
PF07690
MFS_1 51-341 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800120.1 |
Pfam | PF03092 |
BT1 | Family | 22 | 434 | 7.9e-113 | 378.2 | BT1 family |
XP_057800120.1 |
Pfam | PF07690 |
MFS_1 | Family | 57 | 382 | 4.6e-14 | 52.8 | Major Facilitator Superfamily |
XP_057800121.1 |
Pfam | PF03092 |
BT1 | Family | 47 | 393 | 1.4e-84 | 285.0 | BT1 family |
XP_057800121.1 |
Pfam | PF07690 |
MFS_1 | Family | 51 | 341 | 3.6e-11 | 43.3 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。